ss3sim/ss3sim issues and pull requests

#432 - Update DESCRIPTION - r4ss dependency version

Pull Request - State: open - Opened by kinmic 3 months ago

#431 - Vignette advice for data weighting

Pull Request - State: open - Opened by okenk 4 months ago

#430 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago

#429 - Better behavior for recdev start years in `create_em()`

Pull Request - State: closed - Opened by okenk 5 months ago - 1 comment

#428 - revise column names used in SS3 input files to match r4ss

Issue - State: open - Opened by iantaylor-NOAA 7 months ago
Labels: type --- upkeep, topic --- r4ss

#427 - remove ghactions4r workflows

Pull Request - State: closed - Opened by k-doering-NOAA 7 months ago

#425 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#424 - Adds area to `get_results_timeseries()` for SSmse

Pull Request - State: closed - Opened by kellijohnson-NOAA 11 months ago - 8 comments
Labels: topic --- results, type --- feature

#423 - Increase the clarity of specifying F in the Introduction vignette

Issue - State: open - Opened by kellijohnson-NOAA 11 months ago
Labels: topic --- vignette, type --- documentation, status --- low priority

#422 - get_results_timeseries function - possible to sum TS values across areas?

Issue - State: closed - Opened by skylersagarese-NOAA 11 months ago - 3 comments
Labels: topic --- results, status --- wip, type --- feature

#421 - Move references in wiki to a .bib file

Issue - State: open - Opened by kellijohnson-NOAA 12 months ago
Labels: type --- documentation, status --- low priority, topic --- website

#419 - Deterministic self test

Issue - State: closed - Opened by kinmic 12 months ago

#418 - Fix typo in `standardize_sampling_args()`

Pull Request - State: closed - Opened by okenk 12 months ago

#417 - forecast_num argument in change_e needs to be unlisted

Issue - State: closed - Opened by okenk almost 1 year ago - 2 comments
Labels: type --- :bug:, topic --- EM

#417 - forecast_num argument in change_e needs to be unlisted

Issue - State: open - Opened by okenk almost 1 year ago

#416 - Strange report.sso behaviour

Issue - State: closed - Opened by kinmic about 1 year ago - 2 comments
Labels: topic --- Stock Synthesis, type --- upkeep

#414 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#413 - Fix sample index

Pull Request - State: closed - Opened by kellijohnson-NOAA over 1 year ago
Labels: topic --- sampling

#412 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#410 - Transfer update-ss3-version.yml from stock-synthesis workflows repo

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 8 comments
Labels: topic --- ghaction, topic --- Stock Synthesis

#409 - Update ss3 workflow should be on a schedule

Issue - State: open - Opened by kellijohnson-NOAA over 1 year ago
Labels: topic --- ghaction, topic --- Stock Synthesis, type --- upkeep

#408 - use `@inheritParams` instead of template

Issue - State: open - Opened by kellijohnson-NOAA over 1 year ago
Labels: status --- good first issue, type --- upkeep

#407 - Uses `r4ss::SS_read()` in `change_em()`

Pull Request - State: closed - Opened by kellijohnson-NOAA almost 2 years ago
Labels: topic: testing, type: refactor

#405 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment

#404 - Create a {ggplot2} theme for plots

Issue - State: open - Opened by kellijohnson-NOAA about 2 years ago
Labels: topic --- manuscript, topic --- results, status --- low priority, type --- feature

#403 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago

#402 - Vignette intro

Pull Request - State: closed - Opened by kellijohnson-NOAA about 2 years ago

#401 - call-update-

Issue - State: open - Opened by kellijohnson-NOAA over 2 years ago - 1 comment
Labels: status --- high priority, topic --- ghaction, topic --- Stock Synthesis, type --- feature

#400 - Sample agerror

Pull Request - State: open - Opened by chamberlindw over 2 years ago - 1 comment

#399 - Parallel processing function error

Issue - State: closed - Opened by chamberlindw over 2 years ago - 1 comment
Labels: type --- :bug:, topic --- parallel

#398 - call-update-ss3-version.yml does not update NEWS.md

Issue - State: open - Opened by kellijohnson-NOAA over 2 years ago - 1 comment
Labels: status: low priority, topic: ghaction, type: development :building_construction:

#397 - Pull request to update ss3 in {ss3sim} did not run R-CMD checks

Issue - State: open - Opened by kellijohnson-NOAA over 2 years ago - 1 comment
Labels: status: low priority, topic: ghaction, type: refactor

#396 - Update ss3 binaries

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#394 - hess_always no longer supported

Issue - State: open - Opened by chamberlindw over 2 years ago - 1 comment
Labels: type: :grey_question:, topic: vignette, topic: documentation :book:, status: in progress

#393 - feat(sample_index): Adds normal to sample_index

Pull Request - State: closed - Opened by kellijohnson-NOAA over 2 years ago

#392 - New Feature Needed to Sample Index

Issue - State: closed - Opened by chamberlindw over 2 years ago - 1 comment

#391 - Separate running of OM and EM in `ss3sim_base()` into separate functions

Issue - State: open - Opened by kellijohnson-NOAA over 2 years ago
Labels: topic: OM, topic: EM, status: low priority, type: refactor

#390 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#389 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#388 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#387 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#386 - if() conditions comparing class() to string

Issue - State: closed - Opened by kellijohnson-NOAA over 2 years ago
Labels: type: refactor

#385 - Make use of r4ss::run() and other functions for moving files and running models?

Issue - State: closed - Opened by iantaylor-NOAA over 2 years ago - 1 comment
Labels: status: low priority, type: refactor

#384 - Update making-models section on variance adjustments

Issue - State: closed - Opened by kellijohnson-NOAA over 2 years ago
Labels: topic: documentation :book:

#383 - orphaned package gtools

Issue - State: closed - Opened by k-doering-NOAA over 2 years ago - 9 comments
Labels: scary: CRAN

#382 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#381 - 296 effective se sample index

Pull Request - State: closed - Opened by kellijohnson-NOAA over 2 years ago - 2 comments

#380 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#379 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#378 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#377 - Deprecate [substr_r()] and use negative reference in [str_sub()] or [stri_sub()]

Issue - State: closed - Opened by kellijohnson-NOAA over 2 years ago
Labels: topic: parallel, type: refactor

Issue - State: open - Opened by kellijohnson-NOAA almost 3 years ago - 2 comments
Labels: scary: CRAN, status: high priority, status: help wanted, topic: installation :package:, type: refactor, topic: r4ss

#375 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#374 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#373 - Feature -- no EM

Pull Request - State: closed - Opened by kellijohnson-NOAA almost 3 years ago
Labels: type: enhancement, topic: EM

#372 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#371 - Revert "Kotaro Ono's change to add a no estimation option via a new argument"

Pull Request - State: closed - Opened by ChristineStawitz-NOAA almost 3 years ago

#370 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#369 - Outdated link/image in ss3sim

Issue - State: closed - Opened by kellijohnson-NOAA almost 3 years ago - 1 comment
Labels: topic: documentation :book:

#368 - Updates {ss3sim} to use SS3.30.19.1

Pull Request - State: closed - Opened by kellijohnson-NOAA almost 3 years ago - 2 comments
Labels: topic: Stock Synthesis

#367 - Error in `ss3sim_base` - `Error: Error in if (nver < 3) { : argument is of length zero`

Issue - State: closed - Opened by ChristineStawitz-NOAA almost 3 years ago - 4 comments
Labels: scary: bug :lady_beetle:, type: :grey_question:, topic: r4ss

#366 - external estimates of parameters

Issue - State: open - Opened by kellijohnson-NOAA almost 3 years ago
Labels: type --- :bug:, topic --- EM, status --- on hold, type --- feature

#365 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#364 - Add Bio_smry to get_results_timeseries()

Pull Request - State: closed - Opened by rwildermuth almost 3 years ago - 1 comment

#363 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#362 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#361 - Failedtests

Pull Request - State: closed - Opened by kellijohnson-NOAA almost 3 years ago - 1 comment

#360 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#359 - change path in gha files

Pull Request - State: closed - Opened by k-doering-NOAA about 3 years ago - 1 comment

#358 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#357 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#356 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#355 - build: be more specific about when to run gha

Pull Request - State: closed - Opened by k-doering-NOAA about 3 years ago

#354 - Create `simdf` from a dat file

Issue - State: open - Opened by kellijohnson-NOAA about 3 years ago
Labels: topic --- OM, status --- help wanted :heart:, type --- feature, topic --- sampling

#353 - Style code and document

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#352 - fix, test: get get_results_all() working with models not complete

Pull Request - State: closed - Opened by k-doering-NOAA about 3 years ago - 3 comments

#351 - Remove code to produce log file

Pull Request - State: closed - Opened by kellijohnson-NOAA about 3 years ago

#349 - Test style doc together

Pull Request - State: closed - Opened by k-doering-NOAA over 3 years ago

#348 - Style code

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago

#347 - Style code

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago

#346 - Update Roxygen documentation

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago

#345 - Run styler

Pull Request - State: closed - Opened by k-doering-NOAA over 3 years ago - 4 comments

#344 - build, #323: add workflows to style and run devtools::document

Pull Request - State: closed - Opened by k-doering-NOAA over 3 years ago - 12 comments

#343 - use reusable workflows

Pull Request - State: closed - Opened by k-doering-NOAA over 3 years ago - 1 comment

#342 - Change SS to Stock Synthesis and other changes to documentation

Pull Request - State: closed - Opened by kellijohnson-NOAA over 3 years ago
Labels: topic: documentation :book:

#341 - Remove logfile from ss3sim

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago

#340 - `testthat::context()` is deprecated

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago
Labels: topic: style, topic: testing, type: refactor

#339 - SS3 acronym

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago
Labels: topic: documentation :book:, topic: Stock Synthesis

#338 - Vignettes

Pull Request - State: closed - Opened by kellijohnson-NOAA over 3 years ago - 3 comments

#337 - em.dat file has conditional age at length samples with length bins of width 0

Issue - State: closed - Opened by ChristineStawitz-NOAA over 3 years ago - 3 comments

#336 - change @importFrom and use ::

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago - 2 comments
Labels: topic: documentation :book:, topic: style, topic: roxygen2

#335 - update ss3sim to use SS3.30.19

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago - 4 comments
Labels: topic: ghaction, topic: Stock Synthesis, type: development :building_construction:

#334 - Update vignettes

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 1 comment
Labels: topic: vignette, status: in progress, topic: website

#333 - use nmfs-fish-tools pkgdown template

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 6 comments
Labels: topic: vignette, status: in progress, topic: website

#332 - label old issues

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 5 comments
Labels: topic: documentation :book:, status: in progress, type: refactor

#331 - parallel computing is out of date

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 4 comments
Labels: type --- question, topic --- parallel, type --- upkeep

#330 - Move detailed information in Information vignette to function documentation

Issue - State: closed - Opened by kellijohnson-NOAA over 3 years ago - 1 comment
Labels: topic: vignette, topic: documentation :book:

#329 - `change_tv()` should be able to add tv parameters when there are none

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 1 comment
Labels: topic: vignette, topic: documentation :book:, topic: OM, type: refactor

#328 - deprecate convert_to_wide

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 3 comments
Labels: topic: results, type: refactor

#327 - Refactor `get_results_all()` to be more efficient

Issue - State: open - Opened by kellijohnson-NOAA over 3 years ago - 4 comments
Labels: topic: results, type: refactor

GitHub / ss3sim/ss3sim issues and pull requests