Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / srnas/barnaba issues and pull requests

#62 - Raise exceptions instead of sys.exit

Pull Request - State: open - Opened by ollyfutur 3 months ago

#61 - how to plot svg files from out file ( barnaba SEC_STRUCTURE Command )

Issue - State: open - Opened by vas2201 8 months ago - 1 comment

#61 - how to plot svg files from out file ( barnaba SEC_STRUCTURE Command )

Issue - State: open - Opened by vas2201 8 months ago - 1 comment

#60 - Recovering backbone connections

Issue - State: open - Opened by cgoliver 10 months ago

#57 - Test scikit learn

Pull Request - State: closed - Opened by GiovanniBussi over 1 year ago

#56 - Use scikit-learn instead of sklearn

Issue - State: closed - Opened by niz-ka over 1 year ago

#55 - Add CodeQL workflow for GitHub code scanning

Pull Request - State: open - Opened by lgtm-com[bot] over 1 year ago

#54 - Add cutoff option for base stacking and pairing annotation

Pull Request - State: closed - Opened by kntkb almost 2 years ago - 4 comments

#53 - git+https://github.com/scipy/scipy.git

Pull Request - State: closed - Opened by cclauss almost 2 years ago

#52 - [Question] Threshold used to define base stacking

Issue - State: closed - Opened by kntkb almost 2 years ago - 1 comment

#51 - Test on Python 3.11

Pull Request - State: closed - Opened by cclauss almost 2 years ago - 1 comment

#50 - Upgrade GitHub Actions

Pull Request - State: closed - Opened by cclauss almost 2 years ago

#49 - Change versioning system

Pull Request - State: closed - Opened by GiovanniBussi about 2 years ago

#48 - Added GitHub Actions

Pull Request - State: closed - Opened by GiovanniBussi about 2 years ago - 1 comment

#47 - Installation problem

Issue - State: open - Opened by sreisser about 2 years ago - 2 comments

#46 - Torsion values in case of missing residue

Issue - State: open - Opened by mandar5335 over 2 years ago

#45 - Calculating Pseudotorsion angle

Issue - State: closed - Opened by mandar5335 over 2 years ago - 3 comments

#44 - for RNA Analysis

Issue - State: open - Opened by Ompal12 over 3 years ago - 2 comments

#43 - SEC_STRUCTURE problem

Issue - State: open - Opened by LarrySMelidis over 3 years ago - 1 comment

#42 - Modified residues

Issue - State: open - Opened by ghost almost 4 years ago - 2 comments

#41 - Update README.rst

Pull Request - State: closed - Opened by GiovanniBussi over 4 years ago

#40 - does not support calculate base-phosphate interaction

Issue - State: open - Opened by zhanghaomiao about 5 years ago

#39 - Allow using barnaba command line from python

Pull Request - State: closed - Opened by GiovanniBussi over 5 years ago - 1 comment

#38 - Fix for python 3

Pull Request - State: closed - Opened by GiovanniBussi over 5 years ago - 1 comment

#37 - Pyemma compatibility

Issue - State: open - Opened by giopina over 5 years ago

#36 - new release

Issue - State: closed - Opened by GiovanniBussi almost 6 years ago - 2 comments

#35 - Sec struct

Pull Request - State: open - Opened by sreisser about 6 years ago

#34 - add regtest and examples for secondary structure drawings

Issue - State: open - Opened by sbottaro about 6 years ago
Labels: feature request

#33 - all-atoms/backbone only RMSD

Issue - State: closed - Opened by sbottaro about 6 years ago - 1 comment
Labels: feature request

#32 - Sec struct

Pull Request - State: closed - Opened by sreisser about 6 years ago - 5 comments

#31 - BUG annotate conversion to dotbracket

Issue - State: closed - Opened by sreisser about 6 years ago - 1 comment

#30 - Fluc matrix

Pull Request - State: closed - Opened by giopina over 6 years ago

#29 - Create README.md for test directory

Pull Request - State: closed - Opened by giopina over 6 years ago

#28 - Include command-line interface in python library

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 1 comment

#27 - Export modes from command line

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#26 - Fixes in README

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#25 - ENM example does not work

Issue - State: closed - Opened by sbottaro over 6 years ago - 2 comments

#24 - Fixing the ENM tests

Pull Request - State: closed - Opened by giopina over 6 years ago

#23 - create readme for testing

Pull Request - State: closed - Opened by giopina over 6 years ago

#22 - ENM Travis Fail

Issue - State: closed - Opened by sbottaro over 6 years ago - 1 comment

#21 - ENM example

Pull Request - State: closed - Opened by giopina over 6 years ago

#20 - these packages are on pip as well

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 3 comments

#19 - ENM example notebook

Pull Request - State: closed - Opened by giopina over 6 years ago

#18 - setuptools_scm does not work with git archives

Issue - State: closed - Opened by GiovanniBussi over 6 years ago - 4 comments

#17 - support mmCIF format

Issue - State: open - Opened by sbottaro over 6 years ago

#16 - output for different pdb models in ANNOTATE

Issue - State: open - Opened by sreisser over 6 years ago

#15 - add test for ENM of RNA+protein

Pull Request - State: closed - Opened by giopina over 6 years ago

#14 - Attempt to install script correctly

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 5 comments

#13 - Possible issue with python3

Issue - State: closed - Opened by GiovanniBussi over 6 years ago - 2 comments

#12 - Fixed ENM for proteins

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#11 - Warning of extra null modes

Pull Request - State: closed - Opened by giopina over 6 years ago - 3 comments

#10 - Fixed AA selection

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 2 comments

#9 - Added ENM with SBP+C-alpha

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 5 comments

#8 - Allow zero eigenvalues in ENMs

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#7 - ENM fix: cutoff was not passed from command line

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago - 2 comments

#6 - Test failure

Issue - State: closed - Opened by giopina over 6 years ago - 5 comments

#5 - Testing

Issue - State: closed - Opened by giopina over 6 years ago - 3 comments

#4 - Sparse ENMs

Issue - State: closed - Opened by GiovanniBussi over 6 years ago - 11 comments

#3 - Travis-CI support

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#2 - Added full nomenclature for nucleobases

Pull Request - State: closed - Opened by GiovanniBussi over 6 years ago

#1 - Add check for trjconv

Issue - State: closed - Opened by GiovanniBussi almost 10 years ago