Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / srnas/barnaba issues and pull requests
#62 - Raise exceptions instead of sys.exit
Pull Request -
State: open - Opened by ollyfutur 3 months ago
#61 - how to plot svg files from out file ( barnaba SEC_STRUCTURE Command )
Issue -
State: open - Opened by vas2201 8 months ago
- 1 comment
#61 - how to plot svg files from out file ( barnaba SEC_STRUCTURE Command )
Issue -
State: open - Opened by vas2201 8 months ago
- 1 comment
#60 - Recovering backbone connections
Issue -
State: open - Opened by cgoliver 10 months ago
#59 - Correspondence between PDB chain/residue identifiers and `bb.annotate()` output
Issue -
State: open - Opened by cgoliver 10 months ago
#58 - Barnaba usage for kink-turns in Python with custom pdb files
Issue -
State: open - Opened by theoboury over 1 year ago
#57 - Test scikit learn
Pull Request -
State: closed - Opened by GiovanniBussi over 1 year ago
#56 - Use scikit-learn instead of sklearn
Issue -
State: closed - Opened by niz-ka over 1 year ago
#55 - Add CodeQL workflow for GitHub code scanning
Pull Request -
State: open - Opened by lgtm-com[bot] over 1 year ago
#54 - Add cutoff option for base stacking and pairing annotation
Pull Request -
State: closed - Opened by kntkb almost 2 years ago
- 4 comments
#53 - git+https://github.com/scipy/scipy.git
Pull Request -
State: closed - Opened by cclauss almost 2 years ago
#52 - [Question] Threshold used to define base stacking
Issue -
State: closed - Opened by kntkb almost 2 years ago
- 1 comment
#51 - Test on Python 3.11
Pull Request -
State: closed - Opened by cclauss almost 2 years ago
- 1 comment
#50 - Upgrade GitHub Actions
Pull Request -
State: closed - Opened by cclauss almost 2 years ago
#49 - Change versioning system
Pull Request -
State: closed - Opened by GiovanniBussi about 2 years ago
#48 - Added GitHub Actions
Pull Request -
State: closed - Opened by GiovanniBussi about 2 years ago
- 1 comment
#47 - Installation problem
Issue -
State: open - Opened by sreisser about 2 years ago
- 2 comments
#46 - Torsion values in case of missing residue
Issue -
State: open - Opened by mandar5335 over 2 years ago
#45 - Calculating Pseudotorsion angle
Issue -
State: closed - Opened by mandar5335 over 2 years ago
- 3 comments
#44 - for RNA Analysis
Issue -
State: open - Opened by Ompal12 over 3 years ago
- 2 comments
#43 - SEC_STRUCTURE problem
Issue -
State: open - Opened by LarrySMelidis over 3 years ago
- 1 comment
#42 - Modified residues
Issue -
State: open - Opened by ghost almost 4 years ago
- 2 comments
#41 - Update README.rst
Pull Request -
State: closed - Opened by GiovanniBussi over 4 years ago
#40 - does not support calculate base-phosphate interaction
Issue -
State: open - Opened by zhanghaomiao about 5 years ago
#39 - Allow using barnaba command line from python
Pull Request -
State: closed - Opened by GiovanniBussi over 5 years ago
- 1 comment
#38 - Fix for python 3
Pull Request -
State: closed - Opened by GiovanniBussi over 5 years ago
- 1 comment
#37 - Pyemma compatibility
Issue -
State: open - Opened by giopina over 5 years ago
#36 - new release
Issue -
State: closed - Opened by GiovanniBussi almost 6 years ago
- 2 comments
#35 - Sec struct
Pull Request -
State: open - Opened by sreisser about 6 years ago
#34 - add regtest and examples for secondary structure drawings
Issue -
State: open - Opened by sbottaro about 6 years ago
Labels: feature request
#33 - all-atoms/backbone only RMSD
Issue -
State: closed - Opened by sbottaro about 6 years ago
- 1 comment
Labels: feature request
#32 - Sec struct
Pull Request -
State: closed - Opened by sreisser about 6 years ago
- 5 comments
#31 - BUG annotate conversion to dotbracket
Issue -
State: closed - Opened by sreisser about 6 years ago
- 1 comment
#30 - Fluc matrix
Pull Request -
State: closed - Opened by giopina over 6 years ago
#29 - Create README.md for test directory
Pull Request -
State: closed - Opened by giopina over 6 years ago
#28 - Include command-line interface in python library
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 1 comment
#27 - Export modes from command line
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#26 - Fixes in README
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#25 - ENM example does not work
Issue -
State: closed - Opened by sbottaro over 6 years ago
- 2 comments
#24 - Fixing the ENM tests
Pull Request -
State: closed - Opened by giopina over 6 years ago
#23 - create readme for testing
Pull Request -
State: closed - Opened by giopina over 6 years ago
#22 - ENM Travis Fail
Issue -
State: closed - Opened by sbottaro over 6 years ago
- 1 comment
#21 - ENM example
Pull Request -
State: closed - Opened by giopina over 6 years ago
#20 - these packages are on pip as well
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 3 comments
#19 - ENM example notebook
Pull Request -
State: closed - Opened by giopina over 6 years ago
#18 - setuptools_scm does not work with git archives
Issue -
State: closed - Opened by GiovanniBussi over 6 years ago
- 4 comments
#17 - support mmCIF format
Issue -
State: open - Opened by sbottaro over 6 years ago
#16 - output for different pdb models in ANNOTATE
Issue -
State: open - Opened by sreisser over 6 years ago
#15 - add test for ENM of RNA+protein
Pull Request -
State: closed - Opened by giopina over 6 years ago
#14 - Attempt to install script correctly
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 5 comments
#13 - Possible issue with python3
Issue -
State: closed - Opened by GiovanniBussi over 6 years ago
- 2 comments
#12 - Fixed ENM for proteins
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#11 - Warning of extra null modes
Pull Request -
State: closed - Opened by giopina over 6 years ago
- 3 comments
#10 - Fixed AA selection
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 2 comments
#9 - Added ENM with SBP+C-alpha
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 5 comments
#8 - Allow zero eigenvalues in ENMs
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#7 - ENM fix: cutoff was not passed from command line
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
- 2 comments
#6 - Test failure
Issue -
State: closed - Opened by giopina over 6 years ago
- 5 comments
#5 - Testing
Issue -
State: closed - Opened by giopina over 6 years ago
- 3 comments
#4 - Sparse ENMs
Issue -
State: closed - Opened by GiovanniBussi over 6 years ago
- 11 comments
#3 - Travis-CI support
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#2 - Added full nomenclature for nucleobases
Pull Request -
State: closed - Opened by GiovanniBussi over 6 years ago
#1 - Add check for trjconv
Issue -
State: closed - Opened by GiovanniBussi almost 10 years ago