Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / springer-math/Mathematics-of-Epidemics-on-Networks issues and pull requests

#100 - Simple Contagion flow diagrams

Issue - State: open - Opened by joelmiller 3 months ago

#99 - Pairwise equations for simple contagion

Issue - State: open - Opened by joelmiller 3 months ago

#98 - Using Real World Datasets.

Issue - State: open - Opened by SaicharanRitwik39 5 months ago

#97 - fast_SIS broken with initial_infecteds=None, rho=None

Issue - State: closed - Opened by j-bowhay 10 months ago - 3 comments

#96 - Equation 3.5(d)

Issue - State: closed - Opened by ChristineMCraib 10 months ago - 2 comments

#95 - suggestions to improve EoN runtime

Issue - State: open - Opened by joelmiller 10 months ago

#94 - Time varying effective degree Equaiton - Regarding

Issue - State: closed - Opened by Saiprasad-V-R 11 months ago

#92 - Modified Scaling Factor in Clustered Pairwise Model (section 4.2.3)

Issue - State: closed - Opened by tomerberlinski about 1 year ago - 1 comment

#91 - Is the fast_SIR module belong to the complex or simple contagion ？

Issue - State: closed - Opened by mauimoana over 1 year ago - 2 comments

#89 - What transmission module means in SEIR model

Issue - State: closed - Opened by mauimoana over 1 year ago - 6 comments

#88 - Infrence

Issue - State: open - Opened by joelmiller over 1 year ago - 1 comment

#87 - Work with bipartite location/person graphs

Issue - State: open - Opened by joelmiller over 1 year ago

#86 - Error with initial_recovereds

Issue - State: closed - Opened by ireneags almost 2 years ago - 1 comment

#84 - add transparency to simulation display

Issue - State: open - Opened by joelmiller about 2 years ago - 1 comment

#83 - for sim.display, give control over plotting arguments

Issue - State: open - Opened by joelmiller about 2 years ago

#82 - Heterogeneous infectivity simulation

Issue - State: closed - Opened by wenchaohee almost 3 years ago - 2 comments

#81 - how to get the node state by EoN?

Issue - State: closed - Opened by King-1991 almost 3 years ago - 2 comments

#80 - Errata for theorem 6.17 (#76)

Pull Request - State: closed - Opened by klpn over 3 years ago

#79 - fixed 'beta' to 'gamma' in 'estimate_R0'

Pull Request - State: closed - Opened by jsheen over 3 years ago

#78 - estimate_R0

Issue - State: open - Opened by jsheen over 3 years ago - 3 comments

#77 - sim.display has unwanted print statement

Issue - State: open - Opened by joelmiller over 3 years ago

#76 - Theorem 6.17

Issue - State: open - Opened by klpn over 3 years ago - 1 comment

#75 - Erratum: SIS dynamics (Equation 3.5)

Issue - State: closed - Opened by janmoelter over 3 years ago - 2 comments

#74 - confusing in the Competing Diseases example

Issue - State: closed - Opened by mauimoana over 3 years ago - 2 comments

#73 - use setuptools and not distutils for more convenient development

Pull Request - State: closed - Opened by wwaites almost 4 years ago - 2 comments

#72 - Implementing Adaptive Rewiring (from Chapter 8: Dynamic and adaptive networks)

Issue - State: open - Opened by uluturki almost 4 years ago - 4 comments

#71 - Adjust node sizes in trees that have large depths?

Issue - State: open - Opened by rocky almost 4 years ago - 2 comments

#70 - Question about gamma distributed incubation period

Issue - State: closed - Opened by jsheen about 4 years ago - 2 comments

#69 - Complex contagion inefficiency.

Issue - State: open - Opened by joelmiller about 4 years ago

#68 - Complex vs Simple Gillespie in Non-pharmaceutical intervention situations

Issue - State: open - Opened by ConstantinosM about 4 years ago - 6 comments

#67 - Gillespie_simple_contagion doesn't handle self-edges right now

Issue - State: open - Opened by joelmiller about 4 years ago - 1 comment

#66 - recovery_weight and compatibility with NetworkX 2.x

Issue - State: closed - Opened by jaowen over 4 years ago - 1 comment

#65 - Discrete State Calculation

Issue - State: open - Opened by Josh-Priest over 4 years ago - 1 comment

#64 - Recovery rate in discrete model

Issue - State: closed - Opened by atilaajones over 4 years ago - 4 comments

#63 - Multiple Contagions

Issue - State: open - Opened by hcars over 4 years ago - 5 comments

#62 - order of inputs/outputs of heterogeneous pairwise

Issue - State: open - Opened by joelmiller over 4 years ago

#61 - fix little typo

Pull Request - State: closed - Opened by ggrrll over 4 years ago

#60 - Dynamic Networks

Issue - State: closed - Opened by gaianoseworthy over 4 years ago - 6 comments

#59 - General Design Qestion

Issue - State: closed - Opened by gaianoseworthy over 4 years ago - 2 comments

#58 - What is the unit of time?

Issue - State: closed - Opened by crinix16 over 4 years ago - 7 comments

#57 - SIR on Weighted Networks

Issue - State: closed - Opened by crinix16 over 4 years ago - 1 comment

#56 - Efficiency of Adding more compartments

Issue - State: open - Opened by SushantGautam over 4 years ago

#55 - Parallel or Distributed simulations

Issue - State: open - Opened by SushantGautam over 4 years ago

#54 - Figure 1.4(b)

Issue - State: open - Opened by RSMacKay over 4 years ago - 2 comments

#53 - Progress Callback Feature

Issue - State: open - Opened by SushantGautam over 4 years ago - 2 comments

#52 - Plot animation with a graph from matrix

Issue - State: closed - Opened by atilaajones over 4 years ago - 3 comments

#50 - cannot define both initial_recovereds and rho

Issue - State: open - Opened by leotrs over 4 years ago - 3 comments

#49 - Improve ``hierarchy_pos``

Issue - State: open - Opened by joelmiller over 4 years ago

#47 - minor copy edits

Pull Request - State: closed - Opened by labarba almost 5 years ago

#46 - Add transmissions and transmission_tree example

Issue - State: open - Opened by joelmiller almost 5 years ago

#45 - Functional tests for eon

Pull Request - State: closed - Opened by CWiswell-IDM almost 5 years ago - 2 comments

#44 - Adding related work and refs to paper

Issue - State: closed - Opened by hagberg almost 5 years ago - 1 comment

#43 - Functional testing

Issue - State: closed - Opened by hagberg almost 5 years ago - 1 comment

#41 - Update paper.md

Pull Request - State: closed - Opened by kyleniemeyer about 5 years ago

#40 - Why isn't there a ``discrete_SIS``

Issue - State: open - Opened by joelmiller about 5 years ago
Labels: for Future

#39 - Look into using sortedcontainers in Gillespie code

Issue - State: closed - Opened by joelmiller about 5 years ago - 2 comments

#38 - Visualizing SIRV model

Issue - State: closed - Opened by debmalya191 about 5 years ago - 2 comments

#37 - SIRV model

Issue - State: closed - Opened by debmalya191 about 5 years ago

#36 - Transmissions in full_data code

Issue - State: closed - Opened by debmalya191 over 5 years ago - 2 comments

#35 - Discrete SIR with variable Tr and B

Issue - State: closed - Opened by debmalya191 over 5 years ago - 2 comments

#34 - Steady state calculations

Issue - State: open - Opened by debmalya191 over 5 years ago - 2 comments

#33 - node_status error

Issue - State: closed - Opened by debmalya191 over 5 years ago - 1 comment

#32 - Add example with variable susceptibility

Issue - State: closed - Opened by joelmiller over 5 years ago - 3 comments

#31 - EoN users please introduce yourselves

Issue - State: open - Opened by joelmiller over 5 years ago - 8 comments

#29 - Add SEIR code

Issue - State: closed - Opened by joelmiller over 5 years ago - 1 comment

#28 - Speed up Gillespie_Arbitrary

Issue - State: open - Opened by joelmiller over 5 years ago

#26 - Create nonMarkovian arbitrary transitions function

Issue - State: open - Opened by joelmiller over 5 years ago

#24 - interactive visualization:

Issue - State: open - Opened by joelmiller over 5 years ago - 1 comment

#23 - find the source node of the network

Issue - State: open - Opened by vermouthdky over 5 years ago

#22 - random seeds

Issue - State: open - Opened by joelmiller over 5 years ago - 17 comments

#21 - In full data, return who transmitted to whom when

Issue - State: closed - Opened by joelmiller about 6 years ago

#20 - Pair-approximation example

Issue - State: open - Opened by shenii about 6 years ago - 2 comments

#19 - Appears there is no homogeneous_meanfield_from_graph

Issue - State: closed - Opened by joelmiller about 6 years ago - 1 comment

#18 - `get_statuses` should default to all nodes

Issue - State: closed - Opened by joelmiller over 6 years ago

#17 - Add SEIR models

Issue - State: closed - Opened by joelmiller over 6 years ago

#16 - add animation

Issue - State: closed - Opened by joelmiller almost 7 years ago - 3 comments

#15 - add R0 to functions

Issue - State: closed - Opened by joelmiller almost 7 years ago - 1 comment

#14 - name consistency for fast_SIR and basic_discrete_SIR_epidemic

Issue - State: closed - Opened by joelmiller almost 7 years ago - 1 comment

#13 - multiple strains

Issue - State: closed - Opened by joelmiller over 7 years ago - 1 comment
Labels: enhancement

#12 - Add method to give all statuses at given time

Issue - State: closed - Opened by joelmiller over 7 years ago - 2 comments

#11 - improve fast SIR

Issue - State: open - Opened by joelmiller over 7 years ago
Labels: for Future

#10 - add nonMarkovian SIS simulation

Issue - State: closed - Opened by joelmiller over 7 years ago

#9 - Mistakes in book (report minor issues here)

Issue - State: open - Opened by joelmiller over 7 years ago - 3 comments
Labels: bug

#8 - link to errata

Issue - State: closed - Opened by joelmiller over 7 years ago

#7 - Example for figure 3.2 is incomplete

Issue - State: closed - Opened by joelmiller over 7 years ago - 1 comment

#6 - Add initial recovered to all SIR versions.

Issue - State: open - Opened by joelmiller over 7 years ago - 1 comment
Labels: enhancement

#5 - Add setup.py

Issue - State: closed - Opened by joelmiller over 7 years ago - 1 comment
Labels: enhancement

#4 - get pip to work

Issue - State: closed - Opened by joelmiller over 7 years ago - 2 comments
Labels: enhancement

#3 - Documentation: provide markdown for examples, rather than just .py files.

Issue - State: closed - Opened by joelmiller over 7 years ago
Labels: documentation

#2 - Create Gillespie code for weighted networks

Issue - State: closed - Opened by joelmiller over 7 years ago
Labels: enhancement

#1 - Add example with bipartite

Issue - State: closed - Opened by joelmiller over 7 years ago
Labels: documentation