Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / spatial-image/multiscale-spatial-image issues and pull requests

#106 - Add python 3.13 in pyproject and workflows

Pull Request - State: open - Opened by LucaMarconato 2 days ago

#105 - Update pyproject.toml

Pull Request - State: open - Opened by LucaMarconato 2 days ago - 7 comments

#104 - Support for Python 3.13

Issue - State: open - Opened by LucaMarconato 13 days ago - 3 comments

#103 - Add operations to multiscale spatial image

Pull Request - State: closed - Opened by melonora 3 months ago

#102 - update readme example to new xarray

Pull Request - State: closed - Opened by melonora 3 months ago

#101 - Add decorator for skipping nodes without dimension

Pull Request - State: closed - Opened by melonora 3 months ago

#100 - ARM mac failing tests

Issue - State: open - Opened by thewtex 3 months ago - 2 comments

#99 - BUG: download test data from GitHub Releases

Pull Request - State: closed - Opened by thewtex 3 months ago

#98 - drop python.3.13

Pull Request - State: closed - Opened by melonora 3 months ago

#97 - COMP: Bump pixi.lock multiscale-spatial-image

Pull Request - State: closed - Opened by thewtex 3 months ago - 1 comment

#96 - BUG: Remove Python 3.8 conditions in test.yml

Pull Request - State: closed - Opened by thewtex 3 months ago - 10 comments

#95 - DOC: Add Create a release docs

Pull Request - State: closed - Opened by thewtex 3 months ago

#94 - adjust to xarray datatree

Pull Request - State: closed - Opened by melonora 3 months ago - 10 comments

#93 - Datatree functionality is in Xarray

Issue - State: closed - Opened by srivarra 4 months ago - 3 comments

#92 - Add `rgb` argument to `to_multiscale()`

Issue - State: closed - Opened by LucaMarconato 6 months ago - 1 comment

#91 - BUG: Use mode='w' fro pyimagej notebook

Pull Request - State: closed - Opened by thewtex 7 months ago

#90 - pre commit

Pull Request - State: closed - Opened by thewtex 7 months ago

#89 - pyimagej bump

Pull Request - State: closed - Opened by thewtex 7 months ago

#88 - pixi notebooks

Pull Request - State: closed - Opened by thewtex 7 months ago

#87 - pixi conf

Pull Request - State: closed - Opened by thewtex 7 months ago

#86 - BUG: Add zarr to package dependencies

Pull Request - State: closed - Opened by thewtex over 1 year ago

#85 - Update dependencies?

Issue - State: closed - Opened by goanpeca over 1 year ago - 1 comment

#84 - ENH: Add macOS ARM support in CI

Pull Request - State: closed - Opened by thewtex over 1 year ago

#83 - ENH: Add Python 3.12 to CI testing

Pull Request - State: closed - Opened by thewtex over 1 year ago

#82 - BUG: Remove IPFS daemon from CI setup

Pull Request - State: closed - Opened by thewtex over 1 year ago

#81 - datatree accessor to multiscale spatial image

Pull Request - State: closed - Opened by giovp over 1 year ago - 1 comment

#80 - multiscale class not being inherited correctly

Issue - State: closed - Opened by giovp over 1 year ago - 13 comments

#78 - Computing/storing a `MultiscaleSpatialImage` with dask array data

Issue - State: open - Opened by m-albert over 1 year ago - 2 comments

#77 - Problems with Apple Silicon (M1)

Issue - State: closed - Opened by LucaMarconato over 1 year ago - 2 comments

#76 - Clarification on dependence of nth layer on n-1th layer

Issue - State: closed - Opened by ahnsws almost 2 years ago - 1 comment

#75 - ENH: Update CI to include testing for Python 3.11

Pull Request - State: closed - Opened by thewtex about 2 years ago

#74 - list downsampling methods in docstring of `to_multiscale`

Pull Request - State: closed - Opened by giovp about 2 years ago

#73 - raise error for invalid scale factors

Pull Request - State: closed - Opened by giovp about 2 years ago - 3 comments

#72 - BUG: Bump itk version dep for 5.3.0

Pull Request - State: closed - Opened by thewtex about 2 years ago

#71 - napari reader for multiscale-spatial-image datasets

Issue - State: open - Opened by GenevieveBuckley about 2 years ago - 6 comments

#70 - Add cucim Methods

Issue - State: open - Opened by thewtex over 2 years ago

#69 - BUG: Pass mode to to_zarr superclass method

Pull Request - State: closed - Opened by thewtex over 2 years ago

#68 - DOC: Specify to_zarr store type

Pull Request - State: closed - Opened by thewtex over 2 years ago

#67 - BUG: Fix downsampled scale dim order with dask-image resampling

Pull Request - State: closed - Opened by thewtex over 2 years ago

#66 - Dask image label

Pull Request - State: closed - Opened by thewtex over 2 years ago

#65 - Add itkwasm Methods

Issue - State: closed - Opened by thewtex over 2 years ago - 1 comment

#64 - Add itkwasm Methods

Issue - State: open - Opened by thewtex over 2 years ago

#63 - Add scikit-image Methods

Issue - State: open - Opened by thewtex over 2 years ago

#62 - Refactor

Pull Request - State: closed - Opened by thewtex over 2 years ago - 1 comment

#61 - Extras

Pull Request - State: closed - Opened by thewtex over 2 years ago

#60 - ENH: Migrate to hatch for packaging

Pull Request - State: closed - Opened by thewtex over 2 years ago - 1 comment

#59 - Pytest web3 data

Pull Request - State: closed - Opened by thewtex over 2 years ago

#58 - Address scipy deprecation warnings

Issue - State: closed - Opened by tbirdso over 2 years ago - 1 comment

#56 - Update multiscale_spatial_image.py

Pull Request - State: closed - Opened by dzenanz over 2 years ago - 9 comments

#55 - Add test for multi-component downsampling

Issue - State: open - Opened by thewtex over 2 years ago

#54 - Switch from flit to hatch for packaging

Issue - State: closed - Opened by thewtex over 2 years ago

#53 - Add optional dependencies in package "extras"

Issue - State: closed - Opened by thewtex over 2 years ago

#52 - dependency resolution

Issue - State: open - Opened by satra over 2 years ago - 2 comments

#51 - Refactor into package and put methods into separate modules

Issue - State: closed - Opened by thewtex over 2 years ago - 1 comment

#50 - Label image gaussian

Pull Request - State: closed - Opened by thewtex over 2 years ago - 1 comment

#49 - Add ITK_LABEL_IMAGE_GAUSSIAN method

Issue - State: closed - Opened by thewtex over 2 years ago - 1 comment

#48 - Add nibabel Nifti1 example notebook

Issue - State: open - Opened by thewtex over 2 years ago

#47 - ENH: Add a multiscale_spatial_image_version entry to .zattrs

Pull Request - State: closed - Opened by PaulHax over 2 years ago

#46 - ENH: Add `itk_image_to_multiscale` method

Pull Request - State: closed - Opened by tbirdso over 2 years ago - 3 comments

#45 - dask image gaussian

Pull Request - State: closed - Opened by thewtex over 2 years ago

#44 - Add `itk_image_to_multiscale`

Issue - State: closed - Opened by thewtex over 2 years ago - 9 comments

#43 - citation cff

Pull Request - State: closed - Opened by thewtex over 2 years ago

#42 - Sometimes empty top level .zattrs file?

Issue - State: closed - Opened by PaulHax almost 3 years ago - 1 comment

#41 - NGFF axes order and _ARRAY_DIMENSIONS order don't match

Issue - State: open - Opened by PaulHax almost 3 years ago - 1 comment

#40 - ENH: Add DASK_GAUSSIAN scaling and fix ITK_GAUSSIAN

Pull Request - State: closed - Opened by tbirdso almost 3 years ago - 3 comments

#39 - Add GPU testing in CI

Issue - State: open - Opened by thewtex almost 3 years ago

#38 - ENH: Connect to ipfs content providers in CI

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 1 comment

#37 - DOC: Add link to PyImageJ example

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#36 - DOC: Document how to add new testing data

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#35 - ENH: Rename to multiscale-spatial-image

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#34 - Rename package / repository to multiscale-spatial-image

Issue - State: closed - Opened by thewtex almost 3 years ago - 1 comment

#33 - ENH: Cache test data for notebook CI tests

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#32 - ENH: And Convert Tiff File with OME-NGFF Zarr output

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 5 comments

#31 - ENH: Add `ITK_GAUSSIAN` generation option

Pull Request - State: closed - Opened by tbirdso almost 3 years ago - 11 comments

#30 - ENH: Update pip install command in CI

Pull Request - State: closed - Opened by tbirdso almost 3 years ago

#29 - Python install issues

Issue - State: closed - Opened by tbirdso almost 3 years ago - 1 comment

#28 - Serialize scifio.metadata.image to NGFF

Issue - State: open - Opened by thewtex almost 3 years ago

#27 - ENH: Used published ngff schema

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#26 - DOC: Add imageio example

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#25 - Add NGFF Collection output for montage tile configuration tree

Issue - State: open - Opened by thewtex almost 3 years ago

#24 - Testing itk version

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#23 - ENH: Add ConvertPyImageJ example

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 6 comments

#22 - DOC: Add DOI Zenodo badge

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#21 - convert itk

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#20 - Basic docs

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#19 - scale node name

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#18 - ENH: Add NGFF 0.4 JSON Schema validation test

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 4 comments

#17 - ENH: Add notebook CI testing

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#16 - Add NGFF metadata attribute

Issue - State: open - Opened by thewtex almost 3 years ago

#15 - default method

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#14 - Add DASK_IMAGE_GAUSSIAN Method

Issue - State: closed - Opened by thewtex almost 3 years ago - 1 comment

#13 - Add ITK_GAUSSIAN Method

Issue - State: closed - Opened by thewtex almost 3 years ago - 1 comment

#12 - Re-enable MyPy tests or add other type checking

Issue - State: open - Opened by thewtex almost 3 years ago

#11 - zarr on demand

Pull Request - State: closed - Opened by thewtex almost 3 years ago

#10 - WIP: ENH: MultiscaleSpatialImage is an xarray DataTree

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 3 comments

#9 - ENH: CI tests against Python 3.10, drop 3.7

Pull Request - State: closed - Opened by thewtex almost 3 years ago - 1 comment

#8 - xarray DataTree

Issue - State: closed - Opened by TomNicholas about 3 years ago - 12 comments

#7 - ENH: Add MultiscaleSpatialImage type alias

Pull Request - State: closed - Opened by thewtex over 3 years ago