Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sourmash-bio/wort issues and pull requests

#72 - Use pixi for dep management

Pull Request - State: open - Opened by luizirber 4 months ago - 1 comment

#71 - set executable for subprocess.run

Pull Request - State: closed - Opened by luizirber 5 months ago

#70 - Move away from redis

Issue - State: open - Opened by luizirber 7 months ago

#69 - Move DB from postgres to sqlite

Issue - State: open - Opened by luizirber 7 months ago

#68 - Set up sentry

Pull Request - State: closed - Opened by luizirber 11 months ago - 1 comment

#67 - Bump urllib3 from 1.26.16 to 1.26.18

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#66 - Bump gitpython from 3.1.31 to 3.1.37

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#65 - Bump urllib3 from 1.26.16 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#64 - Greyhound updates

Pull Request - State: open - Opened by luizirber about 1 year ago

#63 - Bump gitpython from 3.1.31 to 3.1.34

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#62 - Support metatranscriptomes in daily download

Pull Request - State: closed - Opened by luizirber over 1 year ago

#61 - Bump gitpython from 3.1.31 to 3.1.32

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#60 - use biopython entrez utils for daily downloads

Pull Request - State: closed - Opened by bluegenes over 1 year ago

#59 - update download code to use entrez-direct

Pull Request - State: closed - Opened by bluegenes over 1 year ago - 1 comment

#58 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#56 - Bump flask from 2.2.2 to 2.3.2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#55 - Bump redis from 4.4.0 to 4.4.4

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#54 - Bump redis from 4.4.0 to 4.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#53 - Bump werkzeug from 2.2.2 to 2.2.3

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#52 - Bump ipython from 8.7.0 to 8.10.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, python

#51 - Bump setuptools from 60.1.0 to 65.5.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#50 - Update dependencies

Pull Request - State: closed - Opened by luizirber almost 2 years ago

#49 - Bump wheel from 0.37.1 to 0.38.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#48 - Bump certifi from 2021.10.8 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#47 - Bump mako from 1.1.6 to 1.2.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#46 - Bump numpy from 1.22.0rc3 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#45 - Bump httpie from 2.6.0 to 3.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#44 - Dependency updates

Pull Request - State: closed - Opened by luizirber almost 3 years ago

#43 - Bump pygments from 2.6.1 to 2.7.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#42 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#41 - [WIP] use `sracat` for downloading data from SRA

Pull Request - State: closed - Opened by luizirber about 3 years ago

#40 - running a gubaphage query

Issue - State: open - Opened by rchikhi over 3 years ago - 5 comments

#39 - Is the website down? Everything is timing out

Issue - State: closed - Opened by dkoslicki over 3 years ago - 2 comments

#38 - Greyhound and CLI updates

Pull Request - State: closed - Opened by luizirber almost 4 years ago - 1 comment

#37 - some signatures that have been suppressed by RefSeq/GenBank are not in wort

Issue - State: closed - Opened by taylorreiter about 4 years ago - 1 comment

#36 - Calculating SAC on metagenome clusters

Issue - State: open - Opened by nmb85 about 4 years ago - 3 comments

#35 - Create a feed for daily added datasets

Issue - State: open - Opened by luizirber over 4 years ago

#34 - add computed field to datasets

Pull Request - State: closed - Opened by luizirber over 4 years ago

#33 - redirect to IPFS only

Pull Request - State: closed - Opened by luizirber over 4 years ago

#32 - Add GenBank/RefSeq historical data?

Issue - State: open - Opened by luizirber over 4 years ago

#31 - Add JGI assemblies?

Issue - State: open - Opened by luizirber over 4 years ago

#30 - Add support for genbank/refseq assemblies

Pull Request - State: closed - Opened by luizirber over 4 years ago

#29 - Track task results for datasets

Issue - State: open - Opened by luizirber over 4 years ago

#28 - Check Stark for replacing postgres?

Issue - State: open - Opened by luizirber over 4 years ago

#27 - Split compute queues by size

Pull Request - State: closed - Opened by luizirber over 4 years ago

#26 - Sharing indices

Issue - State: open - Opened by luizirber over 4 years ago

#25 - Save some basic metadata about datasets in the DB

Issue - State: closed - Opened by luizirber over 4 years ago

#24 - Split compute queues

Issue - State: closed - Opened by luizirber over 4 years ago

#23 - Update dockerfiles

Issue - State: open - Opened by luizirber over 4 years ago

#22 - Schemathesis for API testing

Issue - State: open - Opened by luizirber over 4 years ago - 1 comment

#21 - Bump httpie from 1.0.0 to 1.0.3

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#20 - lighthouse ci for frontend

Issue - State: open - Opened by luizirber almost 5 years ago

#19 - Bump werkzeug from 0.14.1 to 0.15.3

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#18 - Bump urllib3 from 1.24.1 to 1.24.2

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#17 - alternatives to keyring crate

Issue - State: open - Opened by luizirber about 5 years ago

#16 - frontend: fixed size download progress

Issue - State: open - Opened by luizirber about 5 years ago

#15 - Use aspera for faster downloads

Issue - State: open - Opened by luizirber over 5 years ago

#14 - make ascii diagrams compatible with svgbob

Issue - State: open - Opened by luizirber over 5 years ago - 1 comment

#13 - Support project file downloads

Issue - State: open - Opened by olgabot about 6 years ago - 2 comments

#12 - bare minimum frontend

Pull Request - State: closed - Opened by luizirber about 6 years ago

#11 - Connexion bearer auth

Pull Request - State: closed - Opened by luizirber about 6 years ago

#10 - Describe token auth in the API once connexion supports it

Issue - State: closed - Opened by luizirber about 6 years ago

#9 - upgrade to connexion 2.0

Pull Request - State: closed - Opened by luizirber about 6 years ago

#8 - SRR7130925 doesn't match regex pattern

Issue - State: open - Opened by olgabot about 6 years ago - 1 comment

#7 - analysis tab in metagenomic SRA results

Issue - State: open - Opened by luizirber about 6 years ago

#6 - Use terraform for infra deploy?

Issue - State: open - Opened by luizirber about 6 years ago

#5 - requester pays buckets

Issue - State: open - Opened by luizirber about 6 years ago

#4 - submit endpoint

Pull Request - State: closed - Opened by luizirber about 6 years ago

#3 - Feature: add a CLI for wort

Pull Request - State: closed - Opened by luizirber about 6 years ago

#2 - Feature: define the API using connexion

Pull Request - State: closed - Opened by luizirber about 6 years ago

#1 - Stop working if no tasks available

Issue - State: closed - Opened by luizirber over 6 years ago - 1 comment
Labels: hpc-worker