Ecosyste.ms: Issues

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GitHub / songweizhi/MetaCHIP issues and pull requests

#48 - Installation issues

Issue - State: closed - Opened by pancrystal over 1 year ago - 2 comments

#47 - The dependencies of MetaCHIP could't be detected

Issue - State: closed - Opened by ZQYYRA over 1 year ago

#46 - NA direction

Issue - State: closed - Opened by schmittel over 1 year ago - 1 comment

#45 - Command line argument error: Argument "subject". File is not accessible

Issue - State: open - Opened by B-1991-ing over 1 year ago - 2 comments

#44 - Biopython need to be >= 1.78, MetaCHIP exited!

Issue - State: closed - Opened by B-1991-ing over 1 year ago - 5 comments

#43 - MetaCHIP working directory detected, program exited!

Issue - State: closed - Opened by XipengLiu over 1 year ago

#42 - plots issues

Issue - State: open - Opened by aslangabriel about 2 years ago

#41 - Plots still produced in v1.10.12

Issue - State: closed - Opened by susheelbhanu about 2 years ago - 1 comment

#40 - Too many files produced

Issue - State: closed - Opened by susheelbhanu about 2 years ago - 2 comments

#39 - All files in strain_pcofg_blastn_results are empty, program exited

Issue - State: closed - Opened by weiting-liang about 2 years ago - 3 comments

#38 - No alias or index file found for nucleotide database

Issue - State: closed - Opened by schmittel over 2 years ago - 1 comment

#37 - Is there a way to suppress generation of flanking region plots?

Issue - State: closed - Opened by polinanvkv over 2 years ago - 1 comment

#36 - Issue when parsing the Ranger-DTL2 output, no circos created

Issue - State: open - Opened by polinanvkv over 2 years ago - 1 comment

#35 - Unexplainable behaviour of MetaCHIP PI

Issue - State: closed - Opened by polinanvkv over 2 years ago - 1 comment

#34 - conda install -c bioconda metachip

Issue - State: open - Opened by fconstancias over 2 years ago - 1 comment

#33 - About the interpretation of the results

Issue - State: open - Opened by maocheng2020 over 2 years ago - 2 comments

#32 - IndexError: list index out of range when MetaCHIP=1.10.9 & biopython=1.79

Issue - State: closed - Opened by yuqingyi33 over 2 years ago - 3 comments

#31 - gene transfers of the same class

Issue - State: closed - Opened by maocheng2020 almost 3 years ago

#30 - identity percentile cutoff

Issue - State: closed - Opened by ntromas almost 3 years ago

#29 - Error in PI step: Invalid index

Issue - State: open - Opened by linshutian02 almost 3 years ago - 1 comment

#27 - Error in PI step with Prodigal

Issue - State: closed - Opened by ddf37 about 3 years ago - 3 comments

#26 - Index out of range

Issue - State: closed - Opened by susheelbhanu about 3 years ago - 10 comments

#25 - blastn issue

Issue - State: closed - Opened by ntromas about 3 years ago - 1 comment

#24 - fixed FileNotFoundError for issue #23

Pull Request - State: closed - Opened by nick-youngblut about 3 years ago - 2 comments

#23 - FileNotFoundError

Issue - State: closed - Opened by nick-youngblut about 3 years ago - 15 comments

#22 - Singularity use

Issue - State: closed - Opened by Lcornet over 3 years ago - 1 comment

#21 - Problem Running BP

Issue - State: closed - Opened by nevermind1996 over 3 years ago - 1 comment

#20 - linclust as alternative to all-vs-all blastn

Issue - State: closed - Opened by nick-youngblut over 3 years ago - 2 comments

#19 - Error in PI step

Issue - State: closed - Opened by BJCampbelllab over 3 years ago - 4 comments

#18 - Rooting the phylogeentic tree

Issue - State: closed - Opened by 473021677 over 3 years ago

#17 - Find HGT between genes of different genomes

Issue - State: open - Opened by ga23981 over 3 years ago - 6 comments

#16 - what is blastdb/*.fasta ?

Issue - State: closed - Opened by mmpust almost 4 years ago - 4 comments

#15 - Question about average group identity

Issue - State: closed - Opened by arsuke almost 4 years ago - 1 comment

#14 - Bio.Alphabet has been removed from Biopython

Issue - State: closed - Opened by SophieS9 almost 4 years ago - 4 comments

#13 - Error: BP step, file not found

Issue - State: closed - Opened by mmpust almost 4 years ago - 2 comments

#12 - Error thrown while running BP

Issue - State: closed - Opened by shreyanshumale about 4 years ago - 7 comments

#11 - MetaChip only identifies one gene in test dataset

Issue - State: closed - Opened by Cables4lyfe about 4 years ago - 1 comment

#10 - Error running Ranger-DTL2 in BP module

Issue - State: closed - Opened by Cables4lyfe about 4 years ago - 5 comments

#9 - Error in BP module

Issue - State: closed - Opened by ghost over 4 years ago - 2 comments

#8 - Index out of range error in MetaCHIP BP

Issue - State: closed - Opened by surh over 4 years ago - 1 comment

#7 - MetaCHIP report errors

Issue - State: closed - Opened by LiZhihua1982 over 4 years ago - 5 comments

#6 - BLAST and identity distribution error

Issue - State: closed - Opened by susheelbhanu over 4 years ago - 12 comments

#5 - Missing ')' in input tree expression

Issue - State: closed - Opened by Thexiyang almost 5 years ago - 3 comments

#4 - rename_cotig

Issue - State: closed - Opened by choumeijiao about 5 years ago - 1 comment

#3 - Error in rgb

Issue - State: closed - Opened by susheelbhanu about 5 years ago - 3 comments

#2 - Unknown Classification

Issue - State: closed - Opened by susheelbhanu about 5 years ago - 2 comments

#1 - Error while performing MetaCHIP PG step

Issue - State: closed - Opened by chenziwu5 over 5 years ago - 1 comment