solvebio/solvebio-python issues and pull requests

#474 - EDPDEV-1535 add commit download support

Pull Request - State: open - Opened by davecap 2 months ago

#473 - Bump elliptic from 6.4.0 to 6.6.0 in /solvebio/contrib/dash/js

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies, javascript

#472 - EDPDEV-1382 - Fixed ls command listing for shortcuts objects

Pull Request - State: open - Opened by vaibhavpfm 4 months ago

#471 - Avoid making connection to API on import

Pull Request - State: closed - Opened by davecap 4 months ago - 1 comment

#470 - Bump elliptic from 6.4.0 to 6.5.7 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, javascript

#469 - EDPDEV-1971 - Fixed regex issue

Pull Request - State: open - Opened by vaibhavpfm 4 months ago

#468 - Bump express from 4.15.2 to 4.20.0 in /solvebio/contrib/dash/js

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, javascript

#467 - Bump webpack from 2.4.1 to 5.94.0 in /solvebio/contrib/dash/js

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, javascript

#466 - Bump streamlit from 1.1.0 to 1.37.0 in /solvebio/contrib/streamlit

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#465 - Support transparent redirection between solvebio.com and quartz.bio

Pull Request - State: closed - Opened by davecap 6 months ago - 1 comment

#464 - EDPDEV-1957 Fix python3 issue related to empty credentials file

Pull Request - State: closed - Opened by davecap 6 months ago

#463 - [Draft] Streamlit bugfixes

Pull Request - State: open - Opened by nishanthmerwin 7 months ago

#462 - revert EDPDEV-1696 require SSL for all connections

Pull Request - State: closed - Opened by davecap 7 months ago

#461 - EDPDEV-1175 Add retry mechanism for s3 upload exceptions

Pull Request - State: closed - Opened by davecap 7 months ago

#460 - Bump dash from 1.19.0 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, python

#459 - Bump streamlit from 1.1.0 to 1.30.0 in /solvebio/contrib/streamlit

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, python

#458 - Bump express from 4.15.2 to 4.19.2 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, javascript

#457 - Bump es5-ext from 0.10.15 to 0.10.64 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, javascript

#456 - Fix issue with yaml loading in recipe sync helper

Pull Request - State: closed - Opened by davecap 8 months ago

#455 - EDPDEV-1660 add 3.11 and 3.12 to test matrix

Pull Request - State: closed - Opened by davecap 8 months ago

#454 - Fix EDPDEV-1696: don't verify SSL for internal connections

Pull Request - State: closed - Opened by davecap 8 months ago - 1 comment

#453 - EDPDEV-1195 Handle Big Objects

Pull Request - State: closed - Opened by nrasulicpfm 9 months ago - 1 comment

#452 - DRAFT: [EDPDEV-1195] Handle Big File Queries

Pull Request - State: closed - Opened by nrasulicpfm 9 months ago

#451 - Add helper script to upgrade templates to Python 3

Pull Request - State: closed - Opened by davecap 9 months ago

#450 - EDPDEV-1195 Query Fail Due to Memory Error

Pull Request - State: closed - Opened by rakesh-precisionformedicine 11 months ago - 1 comment

#448 - Add --follow-shortcuts to ls Command

Pull Request - State: closed - Opened by nrasulicpfm about 1 year ago - 1 comment

#447 - Add Connect to Client Retry Configuration

Pull Request - State: closed - Opened by nrasulicpfm about 1 year ago - 2 comments

#446 - Bump browserify-sign from 4.0.4 to 4.2.2 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#445 - EDPDEV 938 Parallel Download

Pull Request - State: closed - Opened by nrasulicpfm over 1 year ago - 1 comment

#444 - EDPDEV 898 Recursive Upload Shortcuts

Pull Request - State: closed - Opened by nrasulicpfm over 1 year ago - 1 comment

#443 - [EDPDEV-1075] Update env var token names

Pull Request - State: closed - Opened by nishanthmerwin over 1 year ago - 1 comment

#442 - EDPDEV-896 Manage Shortcuts

Pull Request - State: closed - Opened by nrasulicpfm over 1 year ago - 2 comments

#441 - Bump fsevents from 1.1.1 to 1.2.13 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#440 - EDPDEV-1049 fix issue with recursive uploads not using correct global credentials

Pull Request - State: closed - Opened by davecap over 1 year ago

#439 - EDPDEV 898 Recursive Download Shortcuts

Pull Request - State: closed - Opened by nrasulicpfm over 1 year ago

#438 - EDPDEV-1117 Switch API endpoint and datasets used for tests

Pull Request - State: closed - Opened by davecap over 1 year ago

#437 - [EDPDEV-1000] Fix upload bug

Pull Request - State: closed - Opened by nishanthmerwin over 1 year ago

#436 - Add recursive option for ls command

Pull Request - State: closed - Opened by davecap over 1 year ago - 2 comments

#435 - EDPDEV-618 Versioning Support

Pull Request - State: closed - Opened by nrasulicpfm over 1 year ago

#434 - EDPDEV-567: remove nosetests & fixed python 2.7 tests

Pull Request - State: closed - Opened by oboforty over 1 year ago - 1 comment

#433 - Draft: Added Credentials Manager

Pull Request - State: open - Opened by oboforty over 1 year ago - 2 comments

#432 - EDPDEV-382 Fix join query with key_b

Pull Request - State: closed - Opened by kuzentio over 1 year ago

#431 - EDPDEV-206 remove checking already exists folders

Pull Request - State: closed - Opened by kuzentio over 1 year ago - 1 comment

#430 - [EDPDEV-316] Don't re-query for md5 when using GlobalSearch

Pull Request - State: closed - Opened by nishanthmerwin almost 2 years ago

#429 - Skipping vaults from download command

Pull Request - State: closed - Opened by kuzentio almost 2 years ago - 5 comments

#428 - Python 3.10 object.tag() method issue

Issue - State: closed - Opened by PolinaBevad almost 2 years ago - 1 comment

#427 - Bump ua-parser-js from 0.7.12 to 0.7.33 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, javascript

#426 - Bump express from 4.15.2 to 4.18.2 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, javascript

#425 - Allow silent uploads

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago - 2 comments

#424 - [bugfix] - archive-folder argument not used

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago

#423 - BDSIM-412 archival upload support

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago - 1 comment

#422 - BDSIM-411: Implement uploads in parallel via CLI

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago - 3 comments

#421 - Bump minimatch from 3.0.3 to 3.0.8 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, javascript

#420 - Flake8 fixes

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago - 1 comment

#419 - run black and enable github actions on PRs

Pull Request - State: closed - Opened by davecap about 2 years ago

#418 - BDSIM-373: Added recursive data download via sync

Pull Request - State: closed - Opened by nishanthmerwin about 2 years ago - 9 comments

#417 - Document how to run solvebio-python in AWS Lambda

Issue - State: open - Opened by davecap over 2 years ago
Labels: P2:normal, documentation

#416 - Bump streamlit from 1.1.0 to 1.11.1 in /solvebio/contrib/streamlit

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#415 - Bump is-my-json-valid from 2.16.0 to 2.20.6 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, javascript

#414 - add new global search params (vault_scope and entities_match)

Pull Request - State: closed - Opened by davecap over 2 years ago - 2 comments

#413 - Bump node-sass from 4.5.2 to 7.0.0 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, javascript

#412 - Bump ua-parser-js from 0.7.12 to 0.7.31 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, javascript

#411 - Global Beacon interface update

Pull Request - State: closed - Opened by krivi95 about 3 years ago

#410 - Add Global Search and Global Beacon support

Pull Request - State: closed - Opened by davecap about 3 years ago - 2 comments

#409 - Add Global Beacon support

Issue - State: closed - Opened by davecap about 3 years ago
Labels: P2:normal, feature

#408 - fix default restore storage class issue and change to Standard-IA instead of Standard

Pull Request - State: closed - Opened by davecap about 3 years ago

#407 - Bug in restore dataset functionality

Issue - State: closed - Opened by PolinaBevad about 3 years ago - 1 comment
Labels: bug

#406 - make env variables consistent with solvebio-dash

Pull Request - State: closed - Opened by davecap about 3 years ago

#405 - remove dotenv from the streamlit lib

Pull Request - State: closed - Opened by davecap about 3 years ago

#404 - SolveBio OAuth2 wrapper for Streamlit apps

Pull Request - State: closed - Opened by krivi95 over 3 years ago

#403 - Bump path-parse from 1.0.5 to 1.0.7 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, javascript

#402 - Bump tar from 2.2.1 to 2.2.2 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, javascript

#401 - Bump hosted-git-info from 2.4.2 to 2.8.9 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, javascript

#400 - Bump ua-parser-js from 0.7.12 to 0.7.28 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, javascript

#399 - Bump y18n from 3.2.1 to 3.2.2 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, javascript

#398 - Bump pyyaml from 5.3.1 to 5.4 in /recipes

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, python

#397 - Bump pyyaml from 5.3.1 to 5.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, python

#396 - Bump pyyaml from 5.3.1 to 5.4 in /recipes/tests

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, python

#395 - Bump elliptic from 6.4.0 to 6.5.4 in /solvebio/contrib/dash/js

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#394 - Enable pagination for the join method

Pull Request - State: closed - Opened by nikolamaric almost 4 years ago - 3 comments

#393 - Join query limited to 99 records

Issue - State: closed - Opened by damnjanovictanja almost 4 years ago - 1 comment

#392 - File querying shows "999999999999999 more results" when the total is unknown

Issue - State: closed - Opened by davecap almost 4 years ago
Labels: P3:low, enhancement

#391 - Enable sorting of the object fields

Pull Request - State: closed - Opened by nikolamaric almost 4 years ago - 1 comment

#390 - Migrate from Travis to GitHub actions

Pull Request - State: closed - Opened by davecap about 4 years ago - 2 comments

#389 - Enable 'output_format' for a file-based queries

Pull Request - State: closed - Opened by nikolamaric about 4 years ago - 6 comments

#388 - Improve condition that checks page_size param

Pull Request - State: closed - Opened by nikolamaric about 4 years ago - 1 comment

#387 - Handle parallel migrations

Pull Request - State: closed - Opened by davidhpark about 4 years ago

#386 - Handle a query slicing when the potential number of returned records in the query is larger than the number of records left in the dataset/file

Pull Request - State: closed - Opened by nikolamaric about 4 years ago - 1 comment

GitHub / solvebio/solvebio-python issues and pull requests