softmatterlab/DeepTrack2 issues and pull requests

#178 - Set kernel_size when creating model

Issue - State: open - Opened by elindgren over 1 year ago - 3 comments

#176 - BrightField particle has wrong position

Issue - State: closed - Opened by litpuvn over 1 year ago - 1 comment

#175 - Error in "cell migration analysis"_module 5 "Evaluating the network"

Issue - State: closed - Opened by leileiChenplus over 1 year ago - 1 comment

#174 - DeepTrack2 1.5.6

Pull Request - State: closed - Opened by giovannivolpe over 1 year ago

#173 - Release 1.5.5

Pull Request - State: closed - Opened by giovannivolpe over 1 year ago

#172 - Reduce warnings on GPU use

Issue - State: open - Opened by gorkamunoz almost 2 years ago - 4 comments

#171 - More natural implementation for loading LodeSTAR

Issue - State: open - Opened by BenjaminMidtvedt almost 2 years ago

#170 - Update vae.py

Pull Request - State: closed - Opened by JesusPinedaC almost 2 years ago

#169 - Fix issue with repeated oneof-features

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 2 years ago

#168 - dt.OneOf to generate multiple squares or rectangles

Issue - State: closed - Opened by dcnieho almost 2 years ago - 6 comments

#167 - Missing documentation

Issue - State: open - Opened by Henrik-KM almost 2 years ago

#166 - `numpy.int` is deprecated

Issue - State: open - Opened by HarshithBachimanchi almost 2 years ago

#165 - Update graph generators

Pull Request - State: closed - Opened by JesusPinedaC almost 2 years ago

#164 - Release 1.5.2

Pull Request - State: closed - Opened by giovannivolpe almost 2 years ago

#163 - Create virtual staining datasets and tools

Pull Request - State: closed - Opened by JesusPinedaC almost 2 years ago

#162 - Create node regression datasets for training GNN models

Pull Request - State: closed - Opened by JesusPinedaC almost 2 years ago

#161 - CuPy fix for MieScatterers with coherence length

Pull Request - State: closed - Opened by HarshithBachimanchi almost 2 years ago

#160 - Create detection_linking_hela dataset for GNN based models

Pull Request - State: closed - Opened by JesusPinedaC about 2 years ago

#159 - Add new graph datasets

Pull Request - State: closed - Opened by JesusPinedaC about 2 years ago

#158 - Saving & loading models

Issue - State: closed - Opened by seanbyrne226 about 2 years ago - 2 comments

#157 - Change loss input order of CGAN and PCGAN

Pull Request - State: closed - Opened by GideonJagen about 2 years ago

#156 - Pre-trained weights in tutorial not loading

Issue - State: open - Opened by seanbyrne226 about 2 years ago - 2 comments

#155 - removed pydeepimagej from deps

Pull Request - State: closed - Opened by BenjaminMidtvedt about 2 years ago

#154 - Bug?: Pip install fails due to scikit-image

Issue - State: closed - Opened by elindgren about 2 years ago - 2 comments

#153 - Documentation link dead

Issue - State: closed - Opened by dcnieho about 2 years ago - 2 comments

#152 - 1.5.1

Pull Request - State: closed - Opened by giovannivolpe about 2 years ago - 1 comment

#151 - Coherence length fix in MieScatterer

Pull Request - State: closed - Opened by HarshithBachimanchi about 2 years ago - 2 comments

#150 - remove direct getter of properties

Pull Request - State: closed - Opened by BenjaminMidtvedt about 2 years ago

#149 - Fix bug in the GRU gnn layer

Pull Request - State: closed - Opened by JesusPinedaC about 2 years ago

#148 - 1.5.0

Pull Request - State: closed - Opened by giovannivolpe about 2 years ago

#147 - Adds holographictracking dataset

Pull Request - State: closed - Opened by BenjaminMidtvedt about 2 years ago

#146 - TimeDistributed CNN

Pull Request - State: closed - Opened by JesusPinedaC about 2 years ago

#145 - Update transformer models

Pull Request - State: closed - Opened by JesusPinedaC about 2 years ago

#144 - Transfering into Magik

Issue - State: closed - Opened by NuclearHygo about 2 years ago - 2 comments

#143 - LodeSTAR is not consistent across multiple trainings

Issue - State: open - Opened by HarshithBachimanchi about 2 years ago - 1 comment

#142 - Affine inverted x and y

Issue - State: open - Opened by giovannivolpe about 2 years ago

#141 - Extending random data generator to PyTorch Dataset/DataLoader classes

Issue - State: closed - Opened by jacopoabramo about 2 years ago - 7 comments

#140 - Bm/tfd

Pull Request - State: closed - Opened by BenjaminMidtvedt about 2 years ago

#139 - Issues and Feedback from course

Issue - State: closed - Opened by Henrik-KM about 2 years ago - 2 comments

#138 - DeepTrack2 1.4.0

Pull Request - State: closed - Opened by giovannivolpe about 2 years ago

#137 - Bm/version 1.4.0

Pull Request - State: closed - Opened by giovannivolpe about 2 years ago

#136 - Dt/eth cs examples

Pull Request - State: closed - Opened by BenjaminMidtvedt about 2 years ago

#135 - Dark-field microscopy

Issue - State: closed - Opened by weidtn about 2 years ago - 1 comment

#134 - Fix phase correction at focus and offset calculation

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#133 - Speeding up `PyTorchContinousGenerator` by copying multiple features into GPU memory

Issue - State: closed - Opened by jacopoabramo over 2 years ago - 7 comments

#132 - cuDNN Error in MAGIK Colab

Issue - State: closed - Opened by XinyueZhang831 over 2 years ago - 11 comments

#131 - Allow multi-inputs in ContinuousGenerator

Pull Request - State: closed - Opened by JesusPinedaC over 2 years ago

#130 - Fix indexing problems related to tf.gather

Pull Request - State: closed - Opened by JesusPinedaC over 2 years ago - 1 comment

#129 - Jp/rev magik

Pull Request - State: closed - Opened by JesusPinedaC over 2 years ago

#128 - Remove create-badges job

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#127 - Align output region of sampletomask

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#126 - How to link the located particles

Issue - State: closed - Opened by XinyueZhang831 over 2 years ago - 8 comments

#125 - TypeError: '<' not supported between instances of 'float' and 'list'

Issue - State: closed - Opened by XinyueZhang831 over 2 years ago

#124 - Conflicting behaviour with output region

Issue - State: closed - Opened by HarshithBachimanchi over 2 years ago - 2 comments

#123 - z of Scatterers

Issue - State: closed - Opened by weidtn over 2 years ago - 1 comment

#119 - Bm/fix resolution

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#118 - AttributeError with deeptrack.Combine in cell counting

Issue - State: closed - Opened by lkhangkv1995 over 2 years ago - 2 comments

#117 - Differences in image generation between DeepTrack 2.0 and 2.1

Issue - State: closed - Opened by boupojp over 2 years ago - 4 comments
Labels: bug

#116 - Fix bug with calculating pupil radius

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago - 1 comment

#115 - Release of v1.2.0

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#114 - Bm/fix elementwise

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#113 - Bm/fix generator crash

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#112 - Improvements to mie code

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#111 - Bm/fix mie

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#110 - Lodestar Value Error

Issue - State: closed - Opened by NuclearHygo over 2 years ago - 4 comments

#109 - Error Installing The package

Issue - State: closed - Opened by NuclearHygo over 2 years ago - 9 comments

#108 - Train on more than a single image

Issue - State: closed - Opened by LRpz over 2 years ago - 4 comments

#107 - Updated file paths

Pull Request - State: closed - Opened by OptiGE over 2 years ago

#106 - Bm/readme

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#105 - Bm/visualization

Pull Request - State: closed - Opened by BenjaminMidtvedt over 2 years ago

#104 - Jp/vit

Pull Request - State: closed - Opened by JesusPinedaC over 2 years ago - 2 comments

#103 - Issue when importing MAGIK

Issue - State: closed - Opened by BptGrm over 2 years ago - 2 comments

#102 - Jp/mgk

Pull Request - State: closed - Opened by JesusPinedaC over 2 years ago

#101 - Saving and loading LodeSTAR models

Issue - State: closed - Opened by BptGrm over 2 years ago - 2 comments

#98 - DeepTrack 2.1

Pull Request - State: closed - Opened by giovannivolpe almost 3 years ago

#97 - Update to v2.1

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#96 - Revert "V2.1"

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#95 - Bm/examples

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#94 - Jp/magik

Pull Request - State: closed - Opened by JesusPinedaC almost 3 years ago

#93 - Alignment

Pull Request - State: closed - Opened by giovannivolpe almost 3 years ago

#92 - Minor alignment of master and develop

Pull Request - State: closed - Opened by giovannivolpe almost 3 years ago

#91 - Jp/magik

Pull Request - State: closed - Opened by JesusPinedaC almost 3 years ago

#90 - Develop merge branch

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#89 - Develop merge branch

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#88 - Allow use of unit for resolution

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#87 - Jp/magik

Pull Request - State: closed - Opened by JesusPinedaC almost 3 years ago

#86 - 2.0.11.4 breaks import in Google Colab examples

Issue - State: closed - Opened by BptGrm almost 3 years ago - 2 comments

#85 - Bm/simplify core

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#84 - allow user-defined normalization layers

Pull Request - State: closed - Opened by JesusPinedaC almost 3 years ago - 2 comments

#83 - V2.1

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#82 - restructure examples

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#81 - Minor bug-fixes for v2.0

Pull Request - State: closed - Opened by BenjaminMidtvedt almost 3 years ago

#80 - v2.1 issue: Investigate interraction between augmentation and sequences

Issue - State: closed - Opened by BenjaminMidtvedt almost 3 years ago - 1 comment
Labels: enhancement

#79 - v2.1 issue: remove replicate index

Issue - State: closed - Opened by BenjaminMidtvedt almost 3 years ago - 1 comment
Labels: enhancement

#78 - scikit-image not installed through pip + tensorflow version for GPU support

Issue - State: closed - Opened by BptGrm about 3 years ago - 1 comment
Labels: question

#53 - v2.1 model: implement mrcnn

Issue - State: open - Opened by BenjaminMidtvedt over 3 years ago
Labels: enhancement

#51 - v2.1 concept: Splitting scatterers

Issue - State: open - Opened by BenjaminMidtvedt over 3 years ago
Labels: enhancement

#50 - v2.1 feature: Aberrations on gpu

Issue - State: open - Opened by BenjaminMidtvedt over 3 years ago
Labels: enhancement

#46 - v2.1 feature: Geometrical operations

Issue - State: open - Opened by BenjaminMidtvedt over 3 years ago
Labels: enhancement

#41 - Agaton

Pull Request - State: closed - Opened by agtaon over 3 years ago - 5 comments

GitHub / softmatterlab/DeepTrack2 issues and pull requests