soft-matter/trackpy issues and pull requests

#777 - Fix plot_traj(colorby='frame') for intermittent particles.

Pull Request - State: open - Opened by T0T0R 12 days ago

#776 - `memory` not stable between runs

Issue - State: open - Opened by freemansw1 22 days ago

#775 - Error in walkthrough guide during particle filtering

Issue - State: open - Opened by imruffin 2 months ago

#774 - Fix Issue #772, alternative that doesn't affect imsd() but still correctly calculates weighted average for emsd()

Pull Request - State: open - Opened by vivarose 3 months ago

#773 - Fix issue #772, Incorrect zeros included in emsd average when particles are dropped

Pull Request - State: open - Opened by vivarose 3 months ago - 2 comments

#772 - Incorrect zeros included in emsd average when particles are dropped

Issue - State: open - Opened by vivarose 3 months ago - 1 comment

#771 - trackpy.batch only works with processes = 1

Issue - State: open - Opened by ggomes-altos 3 months ago - 2 comments

#770 - MNT: numpy v2.0 compatibility

Pull Request - State: closed - Opened by nkeim 4 months ago
Labels: maintenance

#769 - track

Issue - State: closed - Opened by iboykaka 5 months ago

#768 - Trackpy incompatible with Numpy 2.0

Issue - State: open - Opened by SiFroehl 5 months ago - 3 comments
Labels: maintenance

#767 - MNT: Avoid passing argument to plt.gca()

Pull Request - State: closed - Opened by nkeim 6 months ago

#766 - RLS: Add release notes for v0.6.3

Pull Request - State: closed - Opened by nkeim 6 months ago

#765 - Release v0.6.3

Issue - State: closed - Opened by nkeim 6 months ago

#764 - [Question] How to add optional arguments in after_locate function in tp.batch

Issue - State: closed - Opened by JulietteSavoye 6 months ago - 1 comment

#763 - Fix conda workflow

Pull Request - State: closed - Opened by nkeim 6 months ago - 1 comment
Labels: maintenance

#762 - [Enhancement] Allowing possibility to convert raw image to `uint16`

Issue - State: open - Opened by jacopoabramo 7 months ago

#761 - [Question] methods for initial estimation of `minmass`

Issue - State: open - Opened by jacopoabramo 7 months ago - 1 comment

#760 - Locate only within specific ROI

Issue - State: closed - Opened by PabloAu 7 months ago - 2 comments

#759 - `plot_traj3d` throws error

Issue - State: closed - Opened by jacopoabramo 8 months ago
Labels: maintenance

#758 - fix issue #757

Pull Request - State: closed - Opened by hz-xiaxz 8 months ago - 2 comments

#757 - Error in trackpy.emsd() function: TypeError: mean() got an unexpected keyword argument 'level'

Issue - State: closed - Opened by Jelle111 8 months ago - 5 comments

#756 - tp.batch does not perform batch correctly (all frames output as 0)

Issue - State: open - Opened by joaomamede 9 months ago - 3 comments

#755 - TST: Need to replace a GitHub action

Issue - State: closed - Opened by nkeim 9 months ago
Labels: maintenance

#754 - DOC: Remove Python version from installation.rst

Pull Request - State: closed - Opened by nkeim 9 months ago

#753 - Old Python version in installation instructions

Issue - State: closed - Opened by nkeim 9 months ago

#752 - Use pims.as_grey instead of image[:, :, 1] in walkthrough tutorial.

Issue - State: open - Opened by kevinsmia1939 9 months ago
Labels: trackpy-examples

#751 - Linking using multiple HDF5 files.

Issue - State: closed - Opened by wheelern 10 months ago - 1 comment

#750 - Tutorial shows problem using latest pandas

Issue - State: closed - Opened by jmcclimo2003 10 months ago - 2 comments

#749 - RLS: Release notes for 0.6.2

Pull Request - State: closed - Opened by nkeim 10 months ago

#748 - Release v0.6.2

Issue - State: closed - Opened by nkeim 11 months ago - 5 comments

#747 - [Done] Test with newer Python, deprecation fixes, drop Py3.7 support

Pull Request - State: closed - Opened by caspervdw 11 months ago - 2 comments

#746 - level keyword argument was removed in pandas>2.0

Issue - State: closed - Opened by Pawelbure 11 months ago - 1 comment

#745 - link_df_iter giving TypeError when using pd.concat?

Issue - State: open - Opened by zimengwu 11 months ago

#744 - TST: Weird dtype switching on Windows

Issue - State: closed - Opened by nkeim 12 months ago - 2 comments

#743 - MNT: scipy, Pandas, sklearn compatibility

Pull Request - State: closed - Opened by nkeim 12 months ago - 2 comments

#742 - FIX #738

Pull Request - State: closed - Opened by vivarose about 1 year ago - 2 comments

#741 - Working on a napari-trackpy plugin

Issue - State: open - Opened by joaomamede about 1 year ago - 2 comments

#740 - Update motion.py to fix TypeError: mean() got an unexpected keyword argument 'level' on emsd function

Pull Request - State: closed - Opened by marcocaggioni over 1 year ago

#739 - BUG in utils.py (default_pos_columns)

Pull Request - State: closed - Opened by VeraMTitze over 1 year ago

#738 - tp.emsd TypeError: mean() got an unexpected keyword argument 'level'

Issue - State: closed - Opened by susuwataridib over 1 year ago - 7 comments
Labels: needs PR

#737 - object has no attribute 'long_name' (when inspecting 'frame')

Issue - State: open - Opened by rodrigo-j-goncalves over 1 year ago - 2 comments

#736 - How to find number of pixels in blob

Issue - State: open - Opened by zbenmamoun over 1 year ago

#735 - Fix for issue #734

Pull Request - State: closed - Opened by kevin-duclos over 1 year ago - 5 comments

#734 - Pandas ValueError when calling subtract_drift

Issue - State: open - Opened by kevin-duclos over 1 year ago - 1 comment

#733 - Detector based on the sqrt Airy disk function to localize iSCAT PSFs

Issue - State: open - Opened by PabloAu over 1 year ago

#732 - The number of trajectories is different from the number of unique particle IDs

Issue - State: closed - Opened by lxfhfut over 1 year ago - 2 comments

#731 - Is the particle size squared a suitable measure of area?

Issue - State: open - Opened by zbenmamoun over 1 year ago

#730 - pandas 2.0 breaks emsd calculation

Issue - State: closed - Opened by yichechang over 1 year ago - 2 comments

#729 - How do you save the images TrackPy creates for reports

Issue - State: open - Opened by Rory235 over 1 year ago - 5 comments

#728 - Error in eccentricity calculation

Issue - State: open - Opened by AlexShkarin over 1 year ago

#727 - Trackpy.link search range and memory

Issue - State: open - Opened by DaphneEPFL over 1 year ago

#726 - Using trackpy.batch() on bioformats images in parallel

Issue - State: open - Opened by MMarkovetz over 1 year ago