Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / soedinglab/peng-motif issues and pull requests

#35 - fix the problem when PWM length is longer than sequence lengths

Pull Request - State: closed - Opened by wge11 about 5 years ago

#34 - Bug report

Issue - State: closed - Opened by AnosAhmad over 5 years ago - 1 comment

#33 - C+G content is 40% while A+T content is 60%

Issue - State: open - Opened by wge11 almost 6 years ago

#32 - add flags for parallelization in FDR

Pull Request - State: closed - Opened by wge11 over 6 years ago

#31 - shoot_peng: print error message when no enriched motif was found

Pull Request - State: closed - Opened by croth1 over 6 years ago

#30 - update the evaluation script in shoot_peng

Pull Request - State: closed - Opened by wge11 over 6 years ago - 4 comments

#29 - allow limiting the number of optimized patterns

Pull Request - State: closed - Opened by croth1 over 6 years ago

#28 - added script for creating the release binaries

Pull Request - State: closed - Opened by croth1 over 6 years ago

#27 - mnt: add option to shootpeng that writes stdout to a file

Pull Request - State: closed - Opened by croth1 almost 7 years ago

#26 - Docker image

Issue - State: closed - Opened by pranjan77 almost 7 years ago - 4 comments
Labels: enhancement

#25 - major bug fix in treatment of reverse complement kmers and some minor bug fixes

Pull Request - State: closed - Opened by croth1 almost 7 years ago
Labels: bug, enhancement

#24 - mnt: shoot peng now ignores bmscore header

Pull Request - State: closed - Opened by croth1 about 7 years ago

#22 - Can this copying step be avoided?

Issue - State: closed - Opened by wge11 about 7 years ago
Labels: enhancement

#21 - feature: add option to run shoot peng without pwm scoring

Pull Request - State: closed - Opened by croth1 about 7 years ago

#20 - mnt: flake8 check python scripts with travis

Pull Request - State: closed - Opened by croth1 about 7 years ago

#19 - adjust the paths in shoot_peng

Pull Request - State: closed - Opened by wge11 about 7 years ago - 1 comment

#18 - fixed bugs in counting and evaluating the expectation and more.

Pull Request - State: closed - Opened by croth1 about 7 years ago
Labels: bug, enhancement

#17 - mnt: install scripts with cmake

Pull Request - State: closed - Opened by croth1 about 7 years ago

#16 - feature: check if all executables are available before shooting up peng

Pull Request - State: closed - Opened by croth1 about 7 years ago

#15 - ci: run peng on test data set

Pull Request - State: closed - Opened by croth1 about 7 years ago

#14 - bug: --no-em will now output patterns

Pull Request - State: closed - Opened by croth1 about 7 years ago

#13 - feature: add --silent flag to suppress all output on stdout

Pull Request - State: closed - Opened by croth1 about 7 years ago

#12 - Feature: add option to optimize mutual information

Pull Request - State: closed - Opened by croth1 over 7 years ago

#11 - feature: add enrich-pseudocount-factor commandline argument

Pull Request - State: closed - Opened by croth1 over 7 years ago

#10 - bug: changed bonferroni correction/prior back to the theory

Pull Request - State: closed - Opened by croth1 over 7 years ago

#9 - More verbose pattern optimization

Pull Request - State: closed - Opened by croth1 over 7 years ago

#8 - mnt: added more clang tests by travis

Pull Request - State: closed - Opened by croth1 over 7 years ago

#8 - mnt: added more clang tests by travis

Pull Request - State: closed - Opened by croth1 over 7 years ago

#7 - include <cmath> in the peng.cpp file

Issue - State: closed - Opened by wge11 over 7 years ago - 1 comment

#6 - shoot_peng should be integrated into BaMM-suite

Issue - State: closed - Opened by croth1 over 7 years ago - 1 comment
Labels: enhancement

#5 - command line inconsistency between peng and shoot_peng

Issue - State: closed - Opened by croth1 over 7 years ago - 1 comment

#4 - -version command line argument

Issue - State: closed - Opened by croth1 almost 8 years ago

#3 - segfault on ridiculously small data set.

Issue - State: closed - Opened by croth1 almost 8 years ago - 1 comment

#2 - fix the problem with url in .gitmodule

Pull Request - State: closed - Opened by wge11 almost 8 years ago - 1 comment

#1 - add CMAKE_CXX_FLAGS

Pull Request - State: closed - Opened by wge11 almost 8 years ago - 1 comment