Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / soedinglab/bammmotif2 issues and pull requests

#45 - Additional info about how to use the software

Issue - State: open - Opened by martynakgajos over 5 years ago - 1 comment

#45 - Additional info about how to use the software

Issue - State: open - Opened by martynakgajos over 5 years ago - 1 comment

#44 - fasta headers with single quotes could be misinterpreted as quotation

Pull Request - State: closed - Opened by croth1 over 5 years ago

#44 - fasta headers with single quotes could be misinterpreted as quotation

Pull Request - State: closed - Opened by croth1 over 5 years ago

#43 - fasta headers with single quotes could be misinterpreted as quotation

Pull Request - State: closed - Opened by croth1 over 5 years ago

#43 - fasta headers with single quotes could be misinterpreted as quotation

Pull Request - State: closed - Opened by croth1 over 5 years ago

#42 - conditional probabilities can exceed 1

Issue - State: open - Opened by croth1 over 6 years ago - 1 comment

#42 - conditional probabilities can exceed 1

Issue - State: open - Opened by croth1 over 6 years ago - 1 comment

#41 - Fix probs when position exceed the motif window

Pull Request - State: closed - Opened by wge11 over 6 years ago

#41 - Fix probs when position exceed the motif window

Pull Request - State: closed - Opened by wge11 over 6 years ago

#40 - fixed problems due to Sys.glob's results were platform dependent

Pull Request - State: closed - Opened by croth1 over 6 years ago

#40 - fixed problems due to Sys.glob's results were platform dependent

Pull Request - State: closed - Opened by croth1 over 6 years ago

#39 - fixes problems due to platform dependent Sys.glob

Pull Request - State: closed - Opened by croth1 over 6 years ago - 1 comment

#39 - fixes problems due to platform dependent Sys.glob

Pull Request - State: closed - Opened by croth1 over 6 years ago - 1 comment

#38 - Server does not stop updating when job crashes

Issue - State: closed - Opened by wge11 over 6 years ago

#38 - Server does not stop updating when job crashes

Issue - State: closed - Opened by wge11 over 6 years ago

#37 - fix the error with p-value <= 0

Pull Request - State: closed - Opened by wge11 over 6 years ago

#37 - fix the error with p-value <= 0

Pull Request - State: closed - Opened by wge11 over 6 years ago

#36 - change flag to --parallizeOverMotifs for parallelizing FDR over motifs

Pull Request - State: closed - Opened by wge11 over 6 years ago

#35 - rearrange threads for the parallelization in FDR

Pull Request - State: closed - Opened by wge11 over 6 years ago

#35 - rearrange threads for the parallelization in FDR

Pull Request - State: closed - Opened by wge11 over 6 years ago

#34 - subsample input sequences when input set is too large?

Issue - State: closed - Opened by wge11 over 6 years ago
Labels: enhancement

#34 - subsample input sequences when input set is too large?

Issue - State: closed - Opened by wge11 over 6 years ago
Labels: enhancement

#33 - fix problem with filtering out short sequences

Pull Request - State: closed - Opened by wge11 over 6 years ago

#33 - fix problem with filtering out short sequences

Pull Request - State: closed - Opened by wge11 over 6 years ago

#32 - fix problem with extracting fixed number of positive sequences

Pull Request - State: closed - Opened by wge11 over 6 years ago

#32 - fix problem with extracting fixed number of positive sequences

Pull Request - State: closed - Opened by wge11 over 6 years ago

#30 - adjustments to the server

Issue - State: open - Opened by wge11 almost 7 years ago
Labels: enhancement

#30 - adjustments to the server

Issue - State: open - Opened by wge11 almost 7 years ago
Labels: enhancement

#29 - BaMM-v2.0.2

Pull Request - State: closed - Opened by wge11 almost 7 years ago

#29 - BaMM-v2.0.2

Pull Request - State: closed - Opened by wge11 almost 7 years ago

#28 - filterPWM now works with meme files with less than 2 models

Pull Request - State: closed - Opened by croth1 almost 7 years ago

#28 - filterPWM now works with meme files with less than 2 models

Pull Request - State: closed - Opened by croth1 almost 7 years ago

#27 - tiny typo in CMakeLists.txt: Boost_INCLUDEDIR -> Boost_INCLUDE_DIR

Issue - State: closed - Opened by croth1 almost 7 years ago - 1 comment

#27 - tiny typo in CMakeLists.txt: Boost_INCLUDEDIR -> Boost_INCLUDE_DIR

Issue - State: closed - Opened by croth1 almost 7 years ago - 1 comment

#26 - File format specifications

Issue - State: open - Opened by croth1 about 7 years ago
Labels: documentation

#26 - File format specifications

Issue - State: open - Opened by croth1 about 7 years ago
Labels: documentation

#25 - filterPWM now works with meme files with less than 2 models

Pull Request - State: closed - Opened by croth1 about 7 years ago

#25 - filterPWM now works with meme files with less than 2 models

Pull Request - State: closed - Opened by croth1 about 7 years ago

#24 - Bamm compare

Pull Request - State: closed - Opened by wge11 about 7 years ago

#24 - Bamm compare

Pull Request - State: closed - Opened by wge11 about 7 years ago

#23 - Fix weights

Pull Request - State: closed - Opened by wge11 about 7 years ago

#23 - Fix weights

Pull Request - State: closed - Opened by wge11 about 7 years ago

#22 - Update conversion scripts

Pull Request - State: closed - Opened by mwess about 7 years ago

#22 - Update conversion scripts

Pull Request - State: closed - Opened by mwess about 7 years ago

#21 - add travis; remove filename dependency in R codes

Pull Request - State: closed - Opened by wge11 over 7 years ago

#21 - add travis; remove filename dependency in R codes

Pull Request - State: closed - Opened by wge11 over 7 years ago

#19 - fix the file extension for FDR/BaMMScan

Pull Request - State: closed - Opened by wge11 over 7 years ago

#19 - fix the file extension for FDR/BaMMScan

Pull Request - State: closed - Opened by wge11 over 7 years ago

#18 - rename the output of FDR and BaMMScan

Pull Request - State: closed - Opened by wge11 over 7 years ago

#18 - rename the output of FDR and BaMMScan

Pull Request - State: closed - Opened by wge11 over 7 years ago

#17 - updated functions in FDR

Pull Request - State: closed - Opened by wge11 over 7 years ago

#17 - updated functions in FDR

Pull Request - State: closed - Opened by wge11 over 7 years ago

#16 - Filtering scripts for peng outputs

Pull Request - State: closed - Opened by wge11 over 7 years ago

#16 - Filtering scripts for peng outputs

Pull Request - State: closed - Opened by wge11 over 7 years ago

#15 - merge alpha branch back to master branch

Pull Request - State: closed - Opened by wge11 over 7 years ago

#14 - Bug: Failure if -n <num> is larger than the total number of motifs in the pwm file

Issue - State: closed - Opened by meiermark almost 8 years ago - 1 comment

#13 - bug: vector allocation fails because of short sequences

Issue - State: closed - Opened by meiermark almost 8 years ago - 1 comment

#12 - boost in cmake

Issue - State: closed - Opened by croth1 almost 8 years ago

#11 - bug in joint probability calculation

Issue - State: closed - Opened by croth1 almost 8 years ago - 2 comments
Labels: bug

#10 - plotbamm: weird information calculation?

Issue - State: closed - Opened by croth1 almost 8 years ago
Labels: bug

#9 - install all R files as command line scripts

Issue - State: closed - Opened by croth1 almost 8 years ago - 1 comment

#8 - copy-pasted modified fdrtool in benchmarking code

Pull Request - State: closed - Opened by croth1 almost 8 years ago

#7 - added .gitignore

Pull Request - State: closed - Opened by croth1 almost 8 years ago

#6 - added .gitignore

Pull Request - State: closed - Opened by croth1 almost 8 years ago

#5 - build failure

Issue - State: closed - Opened by croth1 about 8 years ago

#4 - Gitmaster

Pull Request - State: closed - Opened by wge11 about 8 years ago

#3 - Update fdr

Pull Request - State: closed - Opened by wge11 about 8 years ago

#2 - solve the conflicts in utils.h

Pull Request - State: closed - Opened by wge11 about 8 years ago

#1 - update the code

Pull Request - State: closed - Opened by wge11 about 8 years ago