Ecosyste.ms: Issues

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GitHub / snitkin-lab-umich/scripts issues and pull requests

#29 - WARNING_TRANSCRIPT_NO_START_CODON"

Issue - State: open - Opened by katiesaund over 5 years ago - 2 comments

#28 - Non-coding intragenic?

Issue - State: open - Opened by katiesaund over 5 years ago

#27 - row names of mat element have a / at the beginning and end in a test case

Issue - State: closed - Opened by sthiede over 5 years ago - 1 comment

#26 - Install packages if not already installed

Issue - State: open - Opened by alipirani88 over 5 years ago

#23 - Change names to pre-masking and post-masking?

Issue - State: closed - Opened by katiesaund over 5 years ago - 1 comment

#22 - Add outlier test for find samples with elevated FQ

Issue - State: open - Opened by katiesaund over 5 years ago - 1 comment

#21 - Separate locus tag and strand information in snp and indel parser

Issue - State: open - Opened by zenalapp almost 6 years ago - 1 comment

#20 - no full path

Issue - State: closed - Opened by zenalapp almost 6 years ago - 1 comment

#20 - no full path

Issue - State: closed - Opened by zenalapp almost 6 years ago - 1 comment

#19 - add help message

Issue - State: open - Opened by zenalapp almost 6 years ago

#18 - optional .RData input

Issue - State: closed - Opened by zenalapp almost 6 years ago - 1 comment

#17 - remove del

Issue - State: closed - Opened by katiesaund almost 6 years ago - 1 comment

#16 - BLOSUM matrix choice

Issue - State: closed - Opened by katiesaund almost 6 years ago - 2 comments

#15 - FQ/MQ filter information not available

Issue - State: open - Opened by katiesaund almost 6 years ago

#14 - update colors

Issue - State: open - Opened by katiesaund almost 6 years ago - 1 comment

#13 - variant names

Issue - State: closed - Opened by katiesaund almost 6 years ago - 1 comment

#11 - Add a new flag in indel and snp matrix to parse strand information

Issue - State: closed - Opened by sthiede almost 6 years ago - 1 comment

#10 - Create a new function to split lines with duplicate alleles

Issue - State: open - Opened by sthiede almost 6 years ago - 1 comment

#10 - Create a new function to split lines with duplicate alleles

Issue - State: open - Opened by sthiede almost 6 years ago - 1 comment

#9 - Make sure the rownames and row contents match in the snpmat

Issue - State: open - Opened by sthiede almost 6 years ago - 1 comment

#7 - Confused on what to do with variants with locus tag CHR_END, currently removing

Issue - State: open - Opened by sthiede almost 6 years ago - 2 comments

#6 - Add a warning message if there are row names that only include "None"

Issue - State: closed - Opened by sthiede almost 6 years ago - 1 comment

#5 - dummy issue

Issue - State: closed - Opened by katiesaund almost 6 years ago

#4 - Dummy issue

Issue - State: closed - Opened by alipirani88 almost 6 years ago - 1 comment

#3 - Bug/split any annotations

Pull Request - State: closed - Opened by dUmich over 6 years ago

#2 - changed from my computer

Pull Request - State: closed - Opened by sthiede almost 7 years ago

#1 - Update makeTreeVars.R

Pull Request - State: closed - Opened by sthiede almost 7 years ago