Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / snijderlab/rustyms issues and pull requests

#51 - Implemented Cascadia support

Pull Request - State: closed - Opened by aukeheerdink about 1 month ago - 2 comments

#50 - ContraNovo test fix

Pull Request - State: closed - Opened by aukeheerdink about 2 months ago

#49 - Fixed NovoB test

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#47 - Implemented NovoB support

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#46 - Implemented PepNet support

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#45 - Implemented PowerNovo support

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#44 - Implemented InstaNovo support

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#43 - Added PointNovo and BiatNovo tests

Pull Request - State: closed - Opened by aukeheerdink 2 months ago - 1 comment

#42 - DeepNovo family support

Pull Request - State: closed - Opened by aukeheerdink 2 months ago

#41 - Allow control over scoring in alignment

Issue - State: closed - Opened by douweschulte 4 months ago
Labels: A-align

#40 - Question: mass shift modification parsing

Issue - State: closed - Opened by singjc 4 months ago - 5 comments

#39 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#37 - Update python bindings

Issue - State: closed - Opened by douweschulte 7 months ago
Labels: A-python

#36 - Stats position % update

Issue - State: closed - Opened by douweschulte 7 months ago

#35 - Add precursor with charge loss as possible fragment

Issue - State: closed - Opened by douweschulte 7 months ago - 1 comment

#34 - Ensure linear peptide type annotations on edits

Issue - State: closed - Opened by douweschulte 7 months ago
Labels: A-core

#33 - Search for fitting chemical formulas

Issue - State: open - Opened by douweschulte 7 months ago

#32 - Fix display of peptides

Issue - State: closed - Opened by douweschulte 7 months ago
Labels: A-core

#31 - Allow RESID mods

Issue - State: closed - Opened by douweschulte 7 months ago
Labels: A-core

#30 - Split consecutive alignment into consecutive parts

Issue - State: closed - Opened by douweschulte 7 months ago
Labels: A-imgt

#29 - Finish cross-linking annotation

Issue - State: closed - Opened by douweschulte 8 months ago
Labels: A-core

#28 - Allow custom modifications

Issue - State: closed - Opened by douweschulte 10 months ago
Labels: A-core

#27 - Generate amino acid side chain losses from precursor

Issue - State: closed - Opened by douweschulte 10 months ago - 1 comment
Labels: A-core

#25 - Allow glycan fragments to be generated on glycan composition mods

Issue - State: closed - Opened by douweschulte 11 months ago
Labels: A-core

#24 - Generalise the alignment score to one peptide against a set of germlines

Issue - State: open - Opened by douweschulte 11 months ago
Labels: A-align

#23 - Calculate a local score for an annotation

Issue - State: open - Opened by douweschulte 11 months ago
Labels: C-enhancement, A-core, A-identification

#22 - Label any ambiguous source of mass shifts

Issue - State: closed - Opened by douweschulte 11 months ago
Labels: A-core

#21 - Allow isotope annotation

Issue - State: open - Opened by douweschulte 11 months ago
Labels: A-core

#20 - Export annotated spectra

Issue - State: open - Opened by douweschulte 11 months ago
Labels: C-enhancement, A-core

#19 - Add new identification file formats

Issue - State: open - Opened by douweschulte 11 months ago
Labels: A-identification

#18 - Add immonium ions

Issue - State: closed - Opened by douweschulte 11 months ago
Labels: A-core

#17 - Create `LinearPeptide::charge` method

Issue - State: closed - Opened by douweschulte 11 months ago

#16 - Create `RawSpectrum::new` method

Issue - State: closed - Opened by douweschulte 11 months ago - 1 comment

#15 - Add initial version of Python bindings

Pull Request - State: closed - Opened by RalfG 11 months ago - 10 comments
Labels: A-python

#14 - Support mzIdentML

Issue - State: closed - Opened by douweschulte 11 months ago - 1 comment
Labels: C-enhancement, A-identification

#13 - Support mzdata for raw data

Issue - State: closed - Opened by douweschulte 11 months ago
Labels: C-enhancement, A-core

#12 - denoising MGF

Issue - State: closed - Opened by ShelleyJager about 1 year ago - 1 comment
Labels: C-enhancement, A-core

#11 - Sloppy novor

Issue - State: closed - Opened by douweschulte about 1 year ago

#10 - Merge spectra

Issue - State: closed - Opened by douweschulte about 1 year ago - 1 comment
Labels: C-enhancement, A-core

#9 - Most abundant mass is wrong

Issue - State: closed - Opened by douweschulte about 1 year ago - 1 comment
Labels: C-bug

#8 - Formula print does not show additional mass

Issue - State: closed - Opened by douweschulte about 1 year ago
Labels: bug

#7 - Add precision argument to mass based alignment

Issue - State: closed - Opened by douweschulte over 1 year ago
Labels: enhancement, A-mass-based-alignment

#6 - Support for modification based neutral losses and diagnostic ions

Issue - State: closed - Opened by douweschulte over 1 year ago - 3 comments
Labels: C-enhancement, A-core

#5 - Consensus for mass based alignment

Issue - State: open - Opened by douweschulte over 1 year ago
Labels: C-enhancement, A-align

#4 - Median correction

Issue - State: open - Opened by douweschulte over 1 year ago
Labels: C-enhancement, A-core

#3 - Add peaks merging

Issue - State: closed - Opened by douweschulte over 1 year ago - 2 comments
Labels: C-enhancement, A-core

#2 - Support for internal fragments

Issue - State: open - Opened by douweschulte over 1 year ago
Labels: C-enhancement, A-core

#1 - Support glycan fragmentation

Issue - State: closed - Opened by douweschulte over 1 year ago - 3 comments
Labels: enhancement