Ecosyste.ms: Issues

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GitHub / snayfach/MAGpurify issues and pull requests

#28 - gc-content module error (and fix)

Issue - State: open - Opened by leonmhartman 20 days ago

#27 - MAGpurify module errors

Issue - State: open - Opened by cmaggior 3 months ago

#25 - Interpretation of cutoff values

Issue - State: open - Opened by donovan-h-parks over 1 year ago - 2 comments

#24 - too many bam files

Issue - State: open - Opened by dmneedha almost 2 years ago

#23 - lastal: not found

Issue - State: open - Opened by snayfach almost 2 years ago

#21 - phylo-markers: no output file found...

Issue - State: open - Opened by TKsh6 over 2 years ago

#20 - Analysis automation

Issue - State: open - Opened by Philippemetagenomica over 2 years ago - 2 comments

#19 - Error running phylo-markers

Issue - State: open - Opened by jtamames about 3 years ago

#18 - Adding another genome to known-contam?

Issue - State: open - Opened by michoug over 3 years ago

#17 - Suggestions based on trial use

Issue - State: open - Opened by jdwinkler-lanzatech about 4 years ago - 1 comment

#16 - tetra-freq unable to handle "N" nucleotide

Issue - State: open - Opened by mmp3 over 4 years ago - 1 comment

#15 - Question about --weighted-means and % bin removed

Issue - State: open - Opened by brymerr921 over 4 years ago

#14 - "lastal: can't open file: -P" When running "clade-markers"

Issue - State: closed - Opened by hqvuong over 4 years ago - 4 comments

#13 - Add SNP density module

Issue - State: closed - Opened by snayfach almost 5 years ago
Labels: enhancement, wontfix

#12 - Conspecific module

Issue - State: closed - Opened by snayfach almost 5 years ago
Labels: enhancement, wontfix

#11 - Add FPR cutoffs to modules

Issue - State: closed - Opened by snayfach almost 5 years ago
Labels: enhancement, wontfix

#10 - Add coverage module

Pull Request - State: closed - Opened by apcamargo almost 5 years ago - 3 comments

#9 - Fix TNF counting bug

Pull Request - State: closed - Opened by apcamargo almost 5 years ago

#8 - Convert code to Python 3 and minor improvements

Pull Request - State: closed - Opened by apcamargo almost 5 years ago

#7 - No module named 'utility'

Issue - State: closed - Opened by SilasK over 5 years ago - 1 comment

#5 - Conda package

Issue - State: closed - Opened by SilasK over 5 years ago - 1 comment

#4 - add flag for max % of bin removed

Issue - State: closed - Opened by snayfach almost 6 years ago
Labels: enhancement, wontfix

#3 - better instructions for downloaded and unpacking database

Issue - State: closed - Opened by snayfach almost 6 years ago
Labels: enhancement, wontfix

#2 - Integrate mash with run_qc.py conspecific

Issue - State: closed - Opened by snayfach almost 6 years ago
Labels: enhancement, wontfix

#1 - add arguments allowing selecting which modules to use for contamintion removal

Issue - State: closed - Opened by snayfach almost 6 years ago
Labels: enhancement, wontfix