Ecosyste.ms: Issues

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GitHub / snaketron/clustirr issues and pull requests

#35 - get_graph mapps CDR3s to VDJdb. We need flexible mapping function

Issue - State: closed - Opened by snaketron 7 months ago - 1 comment
Labels: enhancement

#34 - Removed input param 'local_min_ove'

Issue - State: closed - Opened by snaketron 7 months ago

#33 - mcparallel -> future

Issue - State: closed - Opened by snaketron 8 months ago - 2 comments

#32 - provide dummy input from tcrdist input -> how to format, provide vignette example, meet Bioconductor deadline

Issue - State: closed - Opened by snaketron 8 months ago - 1 comment
Labels: enhancement, implementation

#30 - default <= weight -> set to 0

Issue - State: closed - Opened by snaketron 8 months ago

#29 - compare controls func.

Issue - State: closed - Opened by snaketron about 1 year ago - 1 comment
Labels: implementation

#28 - directed graph?

Issue - State: closed - Opened by snaketron over 1 year ago - 1 comment

#27 - graph.R and plot_graph.Rd

Issue - State: closed - Opened by snaketron over 1 year ago

#26 - NAMESPACE file

Issue - State: closed - Opened by snaketron over 1 year ago - 2 comments

#25 - check cdr3a / cdr3b plotting

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: implementation

#24 - Add get_igraph() function

Issue - State: closed - Opened by kaozkai over 1 year ago - 1 comment
Labels: implementation

#23 - Version comparison vignette

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#22 - Finish vignette

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#21 - Integrate trim warning

Issue - State: closed - Opened by kaozkai over 1 year ago - 1 comment
Labels: bug

#20 - Find gliph3 difference supporting dataset for vignette

Issue - State: closed - Opened by kaozkai over 1 year ago - 1 comment
Labels: benchmarking

#19 - Rewrite README.md

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#19 - Rewrite README.md

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#18 - Rewrite package description

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#18 - Rewrite package description

Issue - State: closed - Opened by kaozkai over 1 year ago
Labels: documentation

#17 - React to user feedback

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: enhancement

#16 - additional vignette about version comparison

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation, benchmarking

#15 - package vignette

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#15 - package vignette

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#14 - small examples at the end of man files

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#14 - small examples at the end of man files

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#13 - man files (e.g. using roxygen)

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#13 - man files (e.g. using roxygen)

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: documentation

#12 - unit tests

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: implementation

#12 - unit tests

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: implementation

#11 - Check gliphR 1 algorithm

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: bug, benchmarking

#11 - Check gliphR 1 algorithm

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: bug, benchmarking

#10 - Add additional features

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: enhancement

#9 - Bioconductor changes

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: bioconductor guidelines

#8 - Submission process

Issue - State: closed - Opened by kaozkai almost 2 years ago
Labels: submission process

#7 - BiocCheck Status

Issue - State: closed - Opened by kaozkai almost 2 years ago - 2 comments
Labels: bioconductor guidelines

#7 - BiocCheck Status

Issue - State: closed - Opened by kaozkai almost 2 years ago - 2 comments
Labels: bioconductor guidelines

#6 - clustering algorithm in gliphR -> Bioconductor package

Issue - State: closed - Opened by snaketron almost 2 years ago - 1 comment

#6 - clustering algorithm in gliphR -> Bioconductor package

Issue - State: closed - Opened by snaketron almost 2 years ago - 1 comment

#5 - What should be the main input (data_sample) of gliphR?

Issue - State: closed - Opened by snaketron almost 2 years ago - 2 comments
Labels: question

#5 - What should be the main input (data_sample) of gliphR?

Issue - State: closed - Opened by snaketron almost 2 years ago - 2 comments
Labels: question

#4 - New input checks

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: documentation, enhancement

#4 - New input checks

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: documentation, enhancement

#3 - Bechmarking needed

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: question, bioconductor guidelines, benchmarking, submission process

#3 - Bechmarking needed

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: question, bioconductor guidelines, benchmarking, submission process

#2 - General TODO's to make R-package suitable for Bioconductor

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: documentation, bioconductor guidelines

#2 - General TODO's to make R-package suitable for Bioconductor

Issue - State: closed - Opened by snaketron almost 2 years ago
Labels: documentation, bioconductor guidelines

#1 - For global distances allow "interface" to tcrdist3

Issue - State: closed - Opened by snaketron almost 2 years ago - 1 comment
Labels: enhancement

#1 - For global distances allow "interface" to tcrdist3

Issue - State: closed - Opened by snaketron almost 2 years ago - 1 comment
Labels: enhancement