Ecosyste.ms: Issues

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GitHub / snakemake/snakedeploy issues and pull requests

#70 - fix: use conda instead of mamba by default

Pull Request - State: open - Opened by johanneskoester 20 days ago - 1 comment

#68 - chore(main): release 0.10.2

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago - 1 comment
Labels: autorelease: tagged

#67 - fix: Fix snakedeploy hanging forever

Pull Request - State: closed - Opened by fxwiegand about 1 month ago - 1 comment

#66 - chore: release 0.10.1

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago - 1 comment
Labels: autorelease: tagged

#65 - fix: only consider specified packages when stopping because of downgrading

Pull Request - State: closed - Opened by johanneskoester about 2 months ago - 1 comment

#64 - no profile directory deployed along the workflow

Issue - State: open - Opened by cmeesters 2 months ago

#61 - chore: release 0.10.0

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago - 1 comment
Labels: autorelease: tagged

#60 - feat: add method to obtain schemas from workflow repo

Pull Request - State: closed - Opened by johanneskoester 7 months ago

#59 - chore: release 0.9.2

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: autorelease: pending

#58 - chore: release 0.9.1

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#57 - chore: release 0.9.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#56 - chore: release 0.8.7

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: autorelease: pending

#55 - Snakedeploy creates snakefile with broken path

Issue - State: open - Opened by seankmartin almost 2 years ago

#54 - chore: release 0.8.6

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#53 - chore: release 0.8.5

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#51 - chore: release 0.8.4

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#50 - fix: add debugging code for conda env update subcommand

Pull Request - State: closed - Opened by johanneskoester almost 2 years ago

#49 - Use config and schema from tags rather than default branch

Issue - State: open - Opened by nickp60 almost 2 years ago - 1 comment

#48 - chore: release 0.8.3

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#47 - fix: better error handling when parsing package versions

Pull Request - State: closed - Opened by johanneskoester almost 2 years ago

#45 - chore: release 0.8.2

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#44 - fix: various robustness improvements for conda env update mechanism

Pull Request - State: closed - Opened by johanneskoester about 2 years ago

#43 - chore: release 0.8.1

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#42 - fix: if nothing to commit, do not create PR

Pull Request - State: closed - Opened by johanneskoester about 2 years ago

#41 - chore: release 0.8.0

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#39 - chore: release 0.7.2

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#38 - fix: various bug fixes in conda env update process

Pull Request - State: closed - Opened by johanneskoester about 2 years ago

#37 - chore: release 0.7.1

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#36 - fix: glob conda env files passed to related subcommands

Pull Request - State: closed - Opened by johanneskoester about 2 years ago

#35 - chore: release 0.7.0

Pull Request - State: closed - Opened by github-actions[bot] about 2 years ago - 1 comment
Labels: autorelease: tagged

#33 - chore: release 0.6.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#31 - chore: release 0.5.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#30 - chore: release 0.4.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#28 - docs: Add conda/mamba install instructions

Pull Request - State: closed - Opened by tdido over 2 years ago

#27 - feat: test of adding Gitlab provider

Pull Request - State: closed - Opened by vsoch almost 3 years ago - 10 comments

#26 - using snakedeploy with repos not on github

Issue - State: open - Opened by nate-d-olson almost 3 years ago - 24 comments

#25 - chore: release 0.3.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#24 - chore: release 0.2.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago
Labels: autorelease: pending

#23 - fix: Removing quotes from around snakefile in use_module template

Pull Request - State: closed - Opened by vsoch about 3 years ago - 1 comment

#22 - snakedeploy generates a Snakefile with syntax errors:

Issue - State: closed - Opened by mrvollger about 3 years ago - 3 comments

#21 - chore: release 0.2.1

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#20 - fix: minor rephrasing of CLI help.

Pull Request - State: closed - Opened by johanneskoester about 3 years ago

#19 - chore: release please workflow

Pull Request - State: closed - Opened by johanneskoester about 3 years ago

#18 - Use github marker for deployment.

Pull Request - State: closed - Opened by johanneskoester about 3 years ago

#16 - `--use-singularity` broken?

Issue - State: closed - Opened by nikostr over 3 years ago - 1 comment

#15 - Adding versioneer

Pull Request - State: closed - Opened by vsoch over 3 years ago - 2 comments

#14 - Streamline release process

Issue - State: closed - Opened by johanneskoester over 3 years ago - 3 comments

#13 - Exclude "tests" package from dist

Pull Request - State: closed - Opened by mbargull over 3 years ago - 1 comment

#12 - Adapt to module system

Pull Request - State: closed - Opened by johanneskoester over 3 years ago - 6 comments

#11 - adding publish action for pypi

Pull Request - State: closed - Opened by vsoch almost 4 years ago

#10 - New release and auto upload to pypi

Issue - State: closed - Opened by johanneskoester almost 4 years ago - 1 comment

#9 - removing pandas dependency, replacing with reading csv

Pull Request - State: closed - Opened by vsoch almost 4 years ago

#8 - Add subcommand for collecting files by a ruleset of patterns

Pull Request - State: closed - Opened by johanneskoester almost 4 years ago

#7 - adding message to create new repository to clone

Pull Request - State: closed - Opened by vsoch about 4 years ago

#6 - adding start of documentation

Pull Request - State: closed - Opened by vsoch about 4 years ago

#5 - Create snakemake branded documentation

Issue - State: open - Opened by vsoch about 4 years ago

#4 - Create functions for customization

Issue - State: open - Opened by vsoch about 4 years ago

#3 - adding template arguments and documentation in readme

Pull Request - State: closed - Opened by vsoch about 4 years ago

#2 - update branch to main

Pull Request - State: closed - Opened by vsoch about 4 years ago

#1 - Template, or just clone?

Issue - State: closed - Opened by vsoch about 4 years ago - 1 comment