Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / smithlabcode/preseq issues and pull requests

#69 - Errors During make

Issue - State: open - Opened by stooz5 about 1 year ago - 7 comments

#66 - Best practices with low-input library with high rate of PCR duplicates

Issue - State: closed - Opened by jamilla-az over 1 year ago - 4 comments

#64 - lc_extrap: Segmentation dump

Issue - State: open - Opened by cn6659 over 2 years ago - 1 comment

#63 - preseq lc_extrap

Issue - State: open - Opened by DittmanC over 2 years ago - 2 comments

#62 - c_curve and lc_extrap output format

Issue - State: open - Opened by AndreaMariani-AM over 2 years ago

#61 - ls_extrap: too many defects, negative CI, and causes

Issue - State: closed - Opened by iamTad over 2 years ago - 3 comments

#60 - lc_extrap error: saturation

Issue - State: open - Opened by MyBiscuit almost 3 years ago - 1 comment

#58 - to-mr produces unexpected files with garbled reads

Issue - State: open - Opened by vmkalbskopf about 3 years ago

#57 - ERROR: reads unsorted in:

Issue - State: closed - Opened by didillysquat about 3 years ago - 3 comments

#56 - Histogram input file 0 counts

Issue - State: closed - Opened by isinaltinkaya over 3 years ago - 4 comments

#55 - preseq sample reads is not all from bam?

Issue - State: closed - Opened by jiangfuqing over 3 years ago

#54 - `cmath` error on mac OS v11.3.1

Issue - State: closed - Opened by BioTechTimy almost 4 years ago - 4 comments

#53 - cannot install with htslib support

Issue - State: closed - Opened by lidaof about 4 years ago - 3 comments

#52 - Build fails due to missing size_t definition

Issue - State: closed - Opened by knowah about 4 years ago - 6 comments

#51 - Duplication and gc_extrap

Issue - State: open - Opened by nickp60 over 4 years ago - 2 comments

#50 - Malformed file from `to-mr`

Issue - State: open - Opened by nickp60 over 4 years ago - 6 comments

#49 - Estimating the curve with low read count

Issue - State: closed - Opened by JeffreyMaurer over 4 years ago - 2 comments

#48 - Cannot compile 3.1.0 with --enable-hts

Issue - State: closed - Opened by birnbera over 4 years ago - 4 comments

#47 - merge changes

Pull Request - State: closed - Opened by terencewtli over 4 years ago

#46 - Redundancy in setting up RNG

Issue - State: closed - Opened by terencewtli over 4 years ago - 2 comments
Labels: enhancement

#45 - Cannot compile preseq 3.0.2 or 3.0.1 on Linux environment

Issue - State: closed - Opened by TomKellyGenetics over 4 years ago - 3 comments

#44 - `gc_extrap` lower confidence interval giving negative number

Issue - State: closed - Opened by terencewtli over 4 years ago - 1 comment

#43 - Installing preseq on a cluster

Issue - State: closed - Opened by hugokitano over 4 years ago - 2 comments

#42 - Remove RNG.cpp dependency

Issue - State: closed - Opened by amalthomas111 over 4 years ago - 1 comment

#41 - Not able to compile preseq (master)

Issue - State: closed - Opened by CynAro almost 5 years ago - 2 comments

#40 - Make All command

Issue - State: closed - Opened by CynAro almost 5 years ago

#39 - Question on lc_extrap input

Issue - State: closed - Opened by stevenlockton-progenity over 5 years ago - 1 comment

#38 - Problem with SAM support in preseq v2.0.3

Issue - State: closed - Opened by andrewdavidsmith almost 9 years ago - 14 comments

#37 - Fixed compilation errors

Pull Request - State: closed - Opened by nkschaefer over 6 years ago - 1 comment

#36 - Support for fastq? [Feature Request]

Issue - State: closed - Opened by MatthewRalston almost 7 years ago - 2 comments

#35 - Release 2.0.3?

Issue - State: closed - Opened by dpryan79 almost 7 years ago - 1 comment

#34 - Add -B for BED input to gc_extrap

Pull Request - State: closed - Opened by nishill almost 7 years ago - 5 comments

#33 - Is preseq aware of UMI?

Issue - State: closed - Opened by dnaase almost 7 years ago - 4 comments

#32 - Unexpected complexity curves

Issue - State: closed - Opened by tamaraprieto almost 7 years ago - 9 comments

#31 - gc_extrap: marking duplicates and not removing them

Issue - State: closed - Opened by tamaraprieto about 7 years ago - 2 comments

#30 - use LDFLAGS to allow inclusion of libraries in non-standard locations

Pull Request - State: closed - Opened by MatthewMah about 7 years ago - 4 comments

#29 - problem with defect mode

Issue - State: closed - Opened by timydaley almost 8 years ago - 10 comments

#28 - ERROR: Malformed line in SAM format

Issue - State: closed - Opened by c-guzman about 8 years ago - 11 comments

#27 - unable to install / use on el capitan mac

Issue - State: closed - Opened by proukakis over 8 years ago - 3 comments

#26 - Allow user to specify seed for RNG

Pull Request - State: closed - Opened by jstjohn over 8 years ago - 10 comments

#25 - Unable to compile preseq in OS X El Capitain

Issue - State: closed - Opened by kendomaniac over 8 years ago - 2 comments

#24 - Inconsistencies between BAM v. BED

Issue - State: closed - Opened by MediciPrime over 8 years ago - 6 comments

#23 - Including preseqR as a proper subdirectory

Issue - State: closed - Opened by andrewdavidsmith almost 9 years ago
Labels: question

#22 - unable to compile master branch with gcc 5.2.0

Issue - State: closed - Opened by avilella almost 9 years ago - 15 comments

#21 - BAM sorting errors

Issue - State: closed - Opened by MatthewRalston about 9 years ago - 5 comments

#20 - Not all `PROGS` can be built

Issue - State: closed - Opened by rekado over 9 years ago - 1 comment

#19 - 2.0 release tarball does not include smithlab_cpp sources

Issue - State: closed - Opened by rekado over 9 years ago - 3 comments

#18 - Installing preseq - 'samfile_t' does not name a type

Issue - State: closed - Opened by lhogstrom over 9 years ago - 3 comments

#17 - Question regarding "Complexity challenge" (out of curiosity)

Issue - State: closed - Opened by skurscheid over 9 years ago - 2 comments

#16 - VERSION mismatch?

Issue - State: closed - Opened by accopeland over 9 years ago - 1 comment

#15 - install to PREFIX & allow linking with libbam.a

Pull Request - State: closed - Opened by rekado over 9 years ago - 1 comment

#14 - Allow linking against system samtools

Issue - State: closed - Opened by rekado over 9 years ago - 5 comments

#13 - "make all" fails: gsl_cdf.h not found

Issue - State: closed - Opened by khoegenauer almost 10 years ago - 3 comments

#12 - fail to checkout smithlab_cpp

Issue - State: closed - Opened by chaodengusc almost 10 years ago - 1 comment

#11 - please generate a release

Issue - State: closed - Opened by greysAcademicCode almost 10 years ago - 2 comments

#10 - Readme suggestions

Pull Request - State: closed - Opened by ewels over 10 years ago - 3 comments

#9 - Version History

Issue - State: closed - Opened by ewels over 10 years ago - 1 comment

#8 - what is std::ostringstream oss?

Issue - State: closed - Opened by timydaley over 10 years ago - 1 comment

#7 - global constants

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago

#6 - Lots of apparently randomly commented out code

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago

#5 - Many lines of code exceed 80 chars

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago - 1 comment
Labels: bug

#4 - Throwing warnings on OS X

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago - 4 comments
Labels: bug

#3 - Lines longer than 80 characters

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago - 2 comments
Labels: invalid

#2 - Change README.txt to README.md

Issue - State: closed - Opened by andrewdavidsmith over 10 years ago - 1 comment
Labels: enhancement

#1 - Using extensions specific to gcc

Issue - State: closed - Opened by andrewdavidsmith almost 11 years ago - 3 comments