Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / smith-chem-wisc/mzLib issues and pull requests

#699 - Prepare Release - Readers backward compatibility improvement && Remove Develpment Dependency

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: Maintenance, ready for review

#698 - Reader refactoring, take 2

Pull Request - State: closed - Opened by avcarr2 over 1 year ago - 1 comment
Labels: enhancement, ready for review

#697 - Fix add chemical formula with negative values

Pull Request - State: closed - Opened by trishorts over 1 year ago - 3 comments
Labels: bug, ready for review

#696 - Bug in ChemicalFormula.

Pull Request - State: closed - Opened by avcarr2 over 1 year ago - 7 comments
Labels: bug, WIP

#695 - Zero column effects result in identical intensity values

Pull Request - State: closed - Opened by Alexander-Sol over 1 year ago - 4 comments

#693 - weighted mean polish

Pull Request - State: closed - Opened by rmillikin over 1 year ago - 1 comment

#692 - Bruker support

Pull Request - State: closed - Opened by avcarr2 over 1 year ago
Labels: WIP

#691 - Test Median Polish

Pull Request - State: closed - Opened by trishorts over 1 year ago - 1 comment
Labels: Maintenance, ready for review

#690 - Deconvolution Testing Environment

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: ready for review

#689 - 688

Pull Request - State: closed - Opened by trishorts over 1 year ago - 2 comments

#688 - Fix random tests failing after HTTP request fails

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: bug, ready for review

#687 - Fixing namespaces

Pull Request - State: closed - Opened by nbollis over 1 year ago

#686 - Deconvolution Development

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: ready for review

#685 - Simulated data

Pull Request - State: closed - Opened by avcarr2 over 1 year ago - 1 comment
Labels: WIP

#684 - Deconvolution Test Structure

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: WIP

#683 - Averaging Updates

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: bug, enhancement, Maintenance, ready for review

#682 - Deconvolution Refactor Object Entry Point Change

Pull Request - State: closed - Opened by nbollis over 1 year ago - 1 comment
Labels: ready for final review / merge

#681 - Mrs noise estimation

Pull Request - State: closed - Opened by avcarr2 over 1 year ago - 1 comment
Labels: ready for final review / merge

#680 - Added Space

Pull Request - State: closed - Opened by elaboy over 1 year ago

#679 - Full Averaging Incorporation

Pull Request - State: closed - Opened by nbollis over 1 year ago - 2 comments
Labels: ready for final review / merge

#678 - Implemented SpectrumTree Class

Pull Request - State: open - Opened by Alexander-Sol almost 2 years ago - 2 comments

#677 - Edited normalization methods within SpectralSimilarity

Pull Request - State: closed - Opened by Alexander-Sol almost 2 years ago
Labels: ready for review, ready for final review / merge

#675 - Spectral decon

Pull Request - State: open - Opened by Alexander-Sol almost 2 years ago - 4 comments

#674 - Change CompareTo method within DoubleRange to adhere to conventions

Pull Request - State: closed - Opened by Alexander-Sol almost 2 years ago

#673 - Changed Masses and Intensities field in IsotopicDistribution

Pull Request - State: closed - Opened by Alexander-Sol almost 2 years ago
Labels: Maintenance

#670 - Merging smith Master

Pull Request - State: closed - Opened by nbollis almost 2 years ago

#669 - Added CodeCov again

Pull Request - State: closed - Opened by Alexander-Sol almost 2 years ago - 11 comments
Labels: WIP

#668 - Deconvolution Refactoring

Pull Request - State: closed - Opened by nbollis almost 2 years ago
Labels: ready for review

#667 - Added RtHypothesis and RtStdDev fields to ChromatographicPeak in Flas…

Pull Request - State: closed - Opened by Alexander-Sol almost 2 years ago - 1 comment
Labels: ready for review

#666 - [WIP] Add retention time peak width for search to chromatographic peak

Pull Request - State: closed - Opened by trishorts almost 2 years ago
Labels: enhancement, WIP

#665 - added defaults to CZE migration time prediction

Pull Request - State: closed - Opened by weaversd almost 2 years ago
Labels: ready for final review / merge

#664 - Read one based precursor scan number from mzml

Pull Request - State: closed - Opened by trishorts almost 2 years ago - 4 comments

#663 - Reader refactoring

Pull Request - State: closed - Opened by trishorts almost 2 years ago - 2 comments

#662 - Spectral averaging incorporation electric boogaloo

Pull Request - State: closed - Opened by nbollis almost 2 years ago
Labels: ready for review

#661 - Update psi mod obo

Pull Request - State: closed - Opened by trishorts about 2 years ago

#660 - Reader refactoring

Pull Request - State: closed - Opened by avcarr2 about 2 years ago - 2 comments
Labels: WIP

#659 - Obo parsing bug fixes and updates

Pull Request - State: closed - Opened by avcarr2 about 2 years ago - 1 comment

#658 - Delete extra tab flash lfq output

Pull Request - State: closed - Opened by trishorts about 2 years ago

#657 - extra trailing tab in output

Issue - State: closed - Opened by jvolkening about 2 years ago - 2 comments

#656 - Fix issue with build and release after spectral averaging incorporation

Pull Request - State: closed - Opened by nbollis about 2 years ago
Labels: WIP

#655 - Revert net serializer nuget

Pull Request - State: closed - Opened by trishorts about 2 years ago

#654 - 646

Pull Request - State: closed - Opened by trishorts about 2 years ago

#653 - Nuget update rodeo yo

Pull Request - State: closed - Opened by trishorts about 2 years ago

#652 - Period tolerant filename without extension

Pull Request - State: closed - Opened by trishorts about 2 years ago

#651 - Spectral Averaging Incorporation

Pull Request - State: closed - Opened by nbollis about 2 years ago - 1 comment

#650 - Nuget update rodeo yo

Pull Request - State: closed - Opened by trishorts about 2 years ago

#649 - Water ammonia

Pull Request - State: closed - Opened by trishorts about 2 years ago

#648 - Return Water and Ammonia Loss Product Ions

Pull Request - State: closed - Opened by trishorts about 2 years ago

#647 - Rename ammonia and water loss product ions

Pull Request - State: closed - Opened by trishorts about 2 years ago

#646 - Added correction to KullbackLeibler

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago
Labels: ready for final review / merge

#645 - Added correction to KullbackLeibler

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago - 1 comment

#644 - Kullback-Leibler Divergence is 0 if no peaks match

Issue - State: closed - Opened by Alexander-Sol about 2 years ago - 2 comments
Labels: ready for final review / merge

#643 - [WIP] Edited MbrRealData test to include single cell slices

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago

#642 - Target decoy pairing

Pull Request - State: closed - Opened by zdanaceau about 2 years ago - 1 comment

#641 - Added a function to generate decoys from scrambled targets

Pull Request - State: closed - Opened by zdanaceau about 2 years ago - 1 comment

#640 - Fixing uniprot queries

Pull Request - State: closed - Opened by avcarr2 over 2 years ago

#639 - Used legacy.uniprot.org UniProt for download

Pull Request - State: closed - Opened by trishorts over 2 years ago

#638 - Added MsDataFile.MassSpectrum setter method

Pull Request - State: closed - Opened by nbollis over 2 years ago

#637 - Added ProAlanase to protease.tsv, no test implemented

Pull Request - State: closed - Opened by Alexander-Sol over 2 years ago

#636 - Pro alanase

Pull Request - State: closed - Opened by Alexander-Sol over 2 years ago - 3 comments

#635 - New protease

Pull Request - State: closed - Opened by Alexander-Sol over 2 years ago

#634 - Searle spectral similarity

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment

#633 - SpectralEntropy as measure of SpectralSimilarity

Pull Request - State: closed - Opened by Alexander-Sol over 2 years ago

#632 - Kullbck leibler divergence

Pull Request - State: closed - Opened by trishorts over 2 years ago

#631 - [WIP] Added KZ spectrum smoothing and tests

Pull Request - State: open - Opened by avcarr2 over 2 years ago
Labels: WIP

#630 - Kolmogorov–Zurbenko filtering for MzSpectrum objects

Pull Request - State: closed - Opened by avcarr2 over 2 years ago - 1 comment

#629 - Can't build on mac

Issue - State: open - Opened by avcarr2 over 2 years ago - 11 comments

#628 - Ignore empty mzml scans during read

Pull Request - State: closed - Opened by trishorts over 2 years ago - 2 comments

#627 - [WIP] Top down biomarker

Pull Request - State: closed - Opened by trishorts over 2 years ago

#626 - Top down biomarker III

Pull Request - State: closed - Opened by trishorts over 2 years ago

#625 - [WIP] Deconvolution using UniDec

Pull Request - State: open - Opened by avcarr2 over 2 years ago - 1 comment
Labels: WIP

#624 - fix median polish bug when proteins cannot be quantified

Pull Request - State: closed - Opened by rmillikin over 2 years ago

#623 - [WIP] Top down biomarker

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment

#622 - [WIP] Basic mzid writing test

Pull Request - State: closed - Opened by acesnik over 2 years ago

#621 - Top down biomarker

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment
Labels: ready for review

#620 - Use multiline commands in build-test actions to get proper exit codes for tests

Pull Request - State: closed - Opened by acesnik over 2 years ago - 1 comment
Labels: ready for final review / merge

#619 - Use nuget pack instead of dotnet pack

Pull Request - State: closed - Opened by acesnik over 2 years ago

#618 - Fix release push

Pull Request - State: closed - Opened by acesnik over 2 years ago
Labels: ready for final review / merge

#617 - Change directory before restore in release workflow

Pull Request - State: closed - Opened by acesnik over 2 years ago
Labels: ready for final review / merge

#616 - Change build-test branch to master

Pull Request - State: closed - Opened by acesnik over 2 years ago - 1 comment

#615 - .NET 6.0

Pull Request - State: closed - Opened by acesnik over 2 years ago - 14 comments
Labels: ready for review, ready for final review / merge

#613 - [WIP] Finally some unit tests for MassSpectrometry

Pull Request - State: open - Opened by trishorts over 2 years ago - 2 comments
Labels: WIP

#610 - MGF peak list parser expects field separator to be SPACE

Issue - State: closed - Opened by andzajan over 2 years ago - 4 comments

#609 - Proteoform bifurcation when reading xml with features (chain, signal, etc.)

Pull Request - State: closed - Opened by trishorts over 2 years ago
Labels: ready for review

#578 - Update pepXML to version 122 from 120

Pull Request - State: closed - Opened by acesnik over 3 years ago - 4 comments

#559 - [WIP] Permutation Testing

Pull Request - State: open - Opened by zrolfs almost 4 years ago
Labels: WIP

#558 - [WIP] Decoy peptide from target peptide

Pull Request - State: open - Opened by trishorts almost 4 years ago
Labels: WIP

#556 - Depracated PSI-MOD.obo.xml

Issue - State: closed - Opened by trishorts almost 4 years ago - 2 comments

#544 - [WIP] Read, process, and write splice variants

Pull Request - State: closed - Opened by acesnik over 4 years ago - 2 comments
Labels: WIP

#329 - Working with splice variant entries in UniProt XML

Issue - State: open - Opened by acesnik over 6 years ago - 2 comments
Labels: enhancement