Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / smith-chem-wisc/mzLib issues and pull requests
#699 - Prepare Release - Readers backward compatibility improvement && Remove Develpment Dependency
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: Maintenance, ready for review
#698 - Reader refactoring, take 2
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 1 comment
Labels: enhancement, ready for review
#697 - Fix add chemical formula with negative values
Pull Request -
State: closed - Opened by trishorts over 1 year ago
- 3 comments
Labels: bug, ready for review
#696 - Bug in ChemicalFormula.
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 7 comments
Labels: bug, WIP
#695 - Zero column effects result in identical intensity values
Pull Request -
State: closed - Opened by Alexander-Sol over 1 year ago
- 4 comments
#693 - weighted mean polish
Pull Request -
State: closed - Opened by rmillikin over 1 year ago
- 1 comment
#692 - Bruker support
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
Labels: WIP
#691 - Test Median Polish
Pull Request -
State: closed - Opened by trishorts over 1 year ago
- 1 comment
Labels: Maintenance, ready for review
#690 - Deconvolution Testing Environment
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: ready for review
#689 - 688
Pull Request -
State: closed - Opened by trishorts over 1 year ago
- 2 comments
#688 - Fix random tests failing after HTTP request fails
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: bug, ready for review
#687 - Fixing namespaces
Pull Request -
State: closed - Opened by nbollis over 1 year ago
#686 - Deconvolution Development
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: ready for review
#685 - Simulated data
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 1 comment
Labels: WIP
#684 - Deconvolution Test Structure
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: WIP
#683 - Averaging Updates
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: bug, enhancement, Maintenance, ready for review
#682 - Deconvolution Refactor Object Entry Point Change
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: ready for final review / merge
#681 - Mrs noise estimation
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 1 comment
Labels: ready for final review / merge
#680 - Added Space
Pull Request -
State: closed - Opened by elaboy over 1 year ago
#679 - Full Averaging Incorporation
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 2 comments
Labels: ready for final review / merge
#678 - Implemented SpectrumTree Class
Pull Request -
State: open - Opened by Alexander-Sol almost 2 years ago
- 2 comments
#677 - Edited normalization methods within SpectralSimilarity
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
Labels: ready for review, ready for final review / merge
#676 - Normalization methods in SpectralSimilarity have side effects
Issue -
State: closed - Opened by Alexander-Sol almost 2 years ago
#675 - Spectral decon
Pull Request -
State: open - Opened by Alexander-Sol almost 2 years ago
- 4 comments
#674 - Change CompareTo method within DoubleRange to adhere to conventions
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
#673 - Changed Masses and Intensities field in IsotopicDistribution
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
Labels: Maintenance
#672 - IsotopicDistribution returns masses and intensities as separate IEnumerables
Issue -
State: closed - Opened by Alexander-Sol almost 2 years ago
#671 - Moved Proteomics project to subfolder in MassSpectrometry and updated all 'using' references
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
- 1 comment
#670 - Merging smith Master
Pull Request -
State: closed - Opened by nbollis almost 2 years ago
#669 - Added CodeCov again
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
- 11 comments
Labels: WIP
#668 - Deconvolution Refactoring
Pull Request -
State: closed - Opened by nbollis almost 2 years ago
Labels: ready for review
#667 - Added RtHypothesis and RtStdDev fields to ChromatographicPeak in Flas…
Pull Request -
State: closed - Opened by Alexander-Sol almost 2 years ago
- 1 comment
Labels: ready for review
#666 - [WIP] Add retention time peak width for search to chromatographic peak
Pull Request -
State: closed - Opened by trishorts almost 2 years ago
Labels: enhancement, WIP
#665 - added defaults to CZE migration time prediction
Pull Request -
State: closed - Opened by weaversd almost 2 years ago
Labels: ready for final review / merge
#664 - Read one based precursor scan number from mzml
Pull Request -
State: closed - Opened by trishorts almost 2 years ago
- 4 comments
#663 - Reader refactoring
Pull Request -
State: closed - Opened by trishorts almost 2 years ago
- 2 comments
#662 - Spectral averaging incorporation electric boogaloo
Pull Request -
State: closed - Opened by nbollis almost 2 years ago
Labels: ready for review
#661 - Update psi mod obo
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#660 - Reader refactoring
Pull Request -
State: closed - Opened by avcarr2 about 2 years ago
- 2 comments
Labels: WIP
#659 - Obo parsing bug fixes and updates
Pull Request -
State: closed - Opened by avcarr2 about 2 years ago
- 1 comment
#658 - Delete extra tab flash lfq output
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#657 - extra trailing tab in output
Issue -
State: closed - Opened by jvolkening about 2 years ago
- 2 comments
#656 - Fix issue with build and release after spectral averaging incorporation
Pull Request -
State: closed - Opened by nbollis about 2 years ago
Labels: WIP
#655 - Revert net serializer nuget
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#654 - 646
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#653 - Nuget update rodeo yo
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#652 - Period tolerant filename without extension
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#651 - Spectral Averaging Incorporation
Pull Request -
State: closed - Opened by nbollis about 2 years ago
- 1 comment
#650 - Nuget update rodeo yo
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#649 - Water ammonia
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#648 - Return Water and Ammonia Loss Product Ions
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#647 - Rename ammonia and water loss product ions
Pull Request -
State: closed - Opened by trishorts about 2 years ago
#646 - Added correction to KullbackLeibler
Pull Request -
State: closed - Opened by Alexander-Sol about 2 years ago
Labels: ready for final review / merge
#645 - Added correction to KullbackLeibler
Pull Request -
State: closed - Opened by Alexander-Sol about 2 years ago
- 1 comment
#644 - Kullback-Leibler Divergence is 0 if no peaks match
Issue -
State: closed - Opened by Alexander-Sol about 2 years ago
- 2 comments
Labels: ready for final review / merge
#643 - [WIP] Edited MbrRealData test to include single cell slices
Pull Request -
State: closed - Opened by Alexander-Sol about 2 years ago
#642 - Target decoy pairing
Pull Request -
State: closed - Opened by zdanaceau about 2 years ago
- 1 comment
#641 - Added a function to generate decoys from scrambled targets
Pull Request -
State: closed - Opened by zdanaceau about 2 years ago
- 1 comment
#640 - Fixing uniprot queries
Pull Request -
State: closed - Opened by avcarr2 over 2 years ago
#639 - Used legacy.uniprot.org UniProt for download
Pull Request -
State: closed - Opened by trishorts over 2 years ago
#638 - Added MsDataFile.MassSpectrum setter method
Pull Request -
State: closed - Opened by nbollis over 2 years ago
#637 - Added ProAlanase to protease.tsv, no test implemented
Pull Request -
State: closed - Opened by Alexander-Sol over 2 years ago
#636 - Pro alanase
Pull Request -
State: closed - Opened by Alexander-Sol over 2 years ago
- 3 comments
#635 - New protease
Pull Request -
State: closed - Opened by Alexander-Sol over 2 years ago
#634 - Searle spectral similarity
Pull Request -
State: closed - Opened by trishorts over 2 years ago
- 1 comment
#633 - SpectralEntropy as measure of SpectralSimilarity
Pull Request -
State: closed - Opened by Alexander-Sol over 2 years ago
#632 - Kullbck leibler divergence
Pull Request -
State: closed - Opened by trishorts over 2 years ago
#631 - [WIP] Added KZ spectrum smoothing and tests
Pull Request -
State: open - Opened by avcarr2 over 2 years ago
Labels: WIP
#630 - Kolmogorov–Zurbenko filtering for MzSpectrum objects
Pull Request -
State: closed - Opened by avcarr2 over 2 years ago
- 1 comment
#629 - Can't build on mac
Issue -
State: open - Opened by avcarr2 over 2 years ago
- 11 comments
#628 - Ignore empty mzml scans during read
Pull Request -
State: closed - Opened by trishorts over 2 years ago
- 2 comments
#627 - [WIP] Top down biomarker
Pull Request -
State: closed - Opened by trishorts over 2 years ago
#626 - Top down biomarker III
Pull Request -
State: closed - Opened by trishorts over 2 years ago
#625 - [WIP] Deconvolution using UniDec
Pull Request -
State: open - Opened by avcarr2 over 2 years ago
- 1 comment
Labels: WIP
#624 - fix median polish bug when proteins cannot be quantified
Pull Request -
State: closed - Opened by rmillikin over 2 years ago
#623 - [WIP] Top down biomarker
Pull Request -
State: closed - Opened by trishorts over 2 years ago
- 1 comment
#622 - [WIP] Basic mzid writing test
Pull Request -
State: closed - Opened by acesnik over 2 years ago
#621 - Top down biomarker
Pull Request -
State: closed - Opened by trishorts over 2 years ago
- 1 comment
Labels: ready for review
#620 - Use multiline commands in build-test actions to get proper exit codes for tests
Pull Request -
State: closed - Opened by acesnik over 2 years ago
- 1 comment
Labels: ready for final review / merge
#619 - Use nuget pack instead of dotnet pack
Pull Request -
State: closed - Opened by acesnik over 2 years ago
#618 - Fix release push
Pull Request -
State: closed - Opened by acesnik over 2 years ago
Labels: ready for final review / merge
#617 - Change directory before restore in release workflow
Pull Request -
State: closed - Opened by acesnik over 2 years ago
Labels: ready for final review / merge
#616 - Change build-test branch to master
Pull Request -
State: closed - Opened by acesnik over 2 years ago
- 1 comment
#615 - .NET 6.0
Pull Request -
State: closed - Opened by acesnik over 2 years ago
- 14 comments
Labels: ready for review, ready for final review / merge
#614 - Updating to use .NET 6; end of support for .NET 5 is May 8, 2022
Issue -
State: closed - Opened by acesnik over 2 years ago
#613 - [WIP] Finally some unit tests for MassSpectrometry
Pull Request -
State: open - Opened by trishorts over 2 years ago
- 2 comments
Labels: WIP
#610 - MGF peak list parser expects field separator to be SPACE
Issue -
State: closed - Opened by andzajan over 2 years ago
- 4 comments
#609 - Proteoform bifurcation when reading xml with features (chain, signal, etc.)
Pull Request -
State: closed - Opened by trishorts over 2 years ago
Labels: ready for review
#578 - Update pepXML to version 122 from 120
Pull Request -
State: closed - Opened by acesnik over 3 years ago
- 4 comments
#559 - [WIP] Permutation Testing
Pull Request -
State: open - Opened by zrolfs almost 4 years ago
Labels: WIP
#558 - [WIP] Decoy peptide from target peptide
Pull Request -
State: open - Opened by trishorts almost 4 years ago
Labels: WIP
#556 - Depracated PSI-MOD.obo.xml
Issue -
State: closed - Opened by trishorts almost 4 years ago
- 2 comments
#544 - [WIP] Read, process, and write splice variants
Pull Request -
State: closed - Opened by acesnik over 4 years ago
- 2 comments
Labels: WIP
#329 - Working with splice variant entries in UniProt XML
Issue -
State: open - Opened by acesnik over 6 years ago
- 2 comments
Labels: enhancement