Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / smith-chem-wisc/mzLib issues and pull requests
#799 - Issue with Write method in Readers
Issue -
State: open - Opened by Alexander-Sol 23 days ago
- 1 comment
#798 - Modified decoy scrambler to no longer use static Random generator
Pull Request -
State: closed - Opened by Alexander-Sol 23 days ago
- 1 comment
#797 - PTM Stoichiometry
Pull Request -
State: open - Opened by pcruzparri about 1 month ago
#796 - Get Modifications from Full Sequence
Pull Request -
State: open - Opened by nbollis about 1 month ago
- 1 comment
Labels: enhancement, ready for review
#795 - DecoyScrambler now accounts for modifications
Pull Request -
State: closed - Opened by Alexander-Sol about 2 months ago
- 1 comment
#794 - Updated SpectraFileInfo, changed fields to properties
Pull Request -
State: closed - Opened by Alexander-Sol about 2 months ago
- 1 comment
Labels: ready for review
#793 - Quantifiable interfaces for results reading in FlashLFQ
Pull Request -
State: closed - Opened by mzhastings about 2 months ago
- 2 comments
Labels: enhancement
#792 - MSFragger Results Folder Reader
Pull Request -
State: open - Opened by mzhastings about 2 months ago
- 1 comment
#791 - Johnny Deconv 1st Step
Pull Request -
State: open - Opened by nbollis 2 months ago
- 3 comments
Labels: WIP, New Feature
#790 - Updated package versions in nuspec
Pull Request -
State: closed - Opened by Alexander-Sol 2 months ago
#789 - Added scramble method in protein, associated tests
Pull Request -
State: closed - Opened by Alexander-Sol 2 months ago
- 1 comment
#788 - All Quantified Peaks Reader
Pull Request -
State: closed - Opened by nbollis 3 months ago
- 1 comment
Labels: ready for review, New Feature
#787 - [WIP] Fragger reader
Pull Request -
State: open - Opened by Alexander-Sol 3 months ago
#786 - [WIP] Peak alignment
Pull Request -
State: open - Opened by RayMSMS 3 months ago
Labels: WIP
#785 - [WIP] Edited FlashLFQ to include option for verbose peaks
Pull Request -
State: open - Opened by Alexander-Sol 4 months ago
- 1 comment
#784 - Revert intensity pairs pr765
Pull Request -
State: closed - Opened by trishorts 4 months ago
- 1 comment
Labels: bug, Maintenance, ready for review
#783 - Update nearly all nuget packages and .Net to 8.0
Pull Request -
State: closed - Opened by trishorts 4 months ago
- 3 comments
Labels: Maintenance, ready for review
#782 - Sam
Pull Request -
State: open - Opened by trishorts 5 months ago
#781 - .NET 8 transition?
Issue -
State: closed - Opened by acesnik 5 months ago
- 2 comments
#780 - Allow multiple custom fragmentations
Pull Request -
State: closed - Opened by nbollis 5 months ago
- 1 comment
Labels: bug, enhancement, ready for review
#779 - FlashLFQ now enables selection of peptides to be quantified
Pull Request -
State: closed - Opened by Alexander-Sol 5 months ago
- 1 comment
#778 - Update dotnet.yml
Pull Request -
State: closed - Opened by Alexander-Sol 6 months ago
- 1 comment
Labels: Maintenance
#777 - Mbr part1
Pull Request -
State: closed - Opened by Alexander-Sol 6 months ago
- 1 comment
Labels: enhancement, ready for review
#776 - Tims tof reader
Pull Request -
State: open - Opened by Alexander-Sol 6 months ago
- 1 comment
Labels: WIP
#775 - MsPathFinderT result reading
Pull Request -
State: closed - Opened by nbollis 6 months ago
- 2 comments
Labels: ready for review, New Feature
#774 - Added support for crux output
Pull Request -
State: closed - Opened by nbollis 6 months ago
- 1 comment
Labels: ready for review, New Feature
#773 - Allow SSRCalc to be called from just base sequence without constructing PeptideWithSetModifications
Pull Request -
State: closed - Opened by nbollis 6 months ago
- 1 comment
Labels: ready for review
#772 - PSI-MOD download certificate error
Issue -
State: open - Opened by acesnik 6 months ago
#771 - Added IClonable implementation to MsDataScan
Pull Request -
State: closed - Opened by nbollis 7 months ago
- 1 comment
Labels: enhancement
#770 - Fragger Result reading
Pull Request -
State: closed - Opened by nbollis 7 months ago
- 1 comment
Labels: ready for review, New Feature
#769 - Pwsm target decoy
Pull Request -
State: closed - Opened by Alexander-Sol 7 months ago
- 1 comment
#768 - Changed PWSM GetHashCode and Equals methods
Pull Request -
State: closed - Opened by Alexander-Sol 7 months ago
- 1 comment
#767 - Update dotnet.yml
Pull Request -
State: closed - Opened by Alexander-Sol 7 months ago
- 1 comment
Labels: Maintenance, ready for final review / merge
#766 - Spectrum similarity bug fix
Pull Request -
State: closed - Opened by trishorts 7 months ago
Labels: bug, ready for review
#765 - Improved intensity pairs trying to make spectrum library comparisons faster
Pull Request -
State: closed - Opened by trishorts 7 months ago
- 1 comment
Labels: Performance, ready for review
#764 - Test fixed mod gptmd mod competition during digestion
Pull Request -
State: closed - Opened by trishorts 8 months ago
Labels: Documentation, Discussion, ready for review
#763 - Handled edge case with digestion product having a null parent
Pull Request -
State: closed - Opened by nbollis 8 months ago
- 1 comment
Labels: bug, ready for review
#762 - Peptide with set mods no protein parent
Pull Request -
State: closed - Opened by trishorts 8 months ago
Labels: bug
#761 - Chronologer Retention Time model predictor
Pull Request -
State: open - Opened by elaboy 8 months ago
- 1 comment
Labels: ready for review, New Feature
#760 - Changed Deconvoluter to have a static call
Pull Request -
State: closed - Opened by nbollis 8 months ago
- 1 comment
Labels: bug, enhancement, ready for review
#759 - Add leucine to chymo cleavage motif
Pull Request -
State: closed - Opened by trishorts 8 months ago
Labels: bug, ready for review
#758 - Mbr refactor
Pull Request -
State: closed - Opened by Alexander-Sol 8 months ago
- 1 comment
#757 - Nucleotide, Rnase, Digestion Params Clone Method, and Interface Modificaiton
Pull Request -
State: closed - Opened by nbollis 9 months ago
- 1 comment
Labels: enhancement, ready for review, New Feature
#756 - Changed behavior of masked members in Digestionparams
Pull Request -
State: closed - Opened by nbollis 9 months ago
- 1 comment
Labels: bug, ready for review
#755 - Usi downloader
Pull Request -
State: open - Opened by Alexander-Sol 9 months ago
- 1 comment
#754 - Retriever of Pride Data
Pull Request -
State: open - Opened by YulingDai 9 months ago
- 1 comment
#753 - Proteomics repository retriever
Pull Request -
State: open - Opened by trishorts 9 months ago
#752 - Mz spectrum weighted merge within mz tolerance
Pull Request -
State: open - Opened by trishorts 9 months ago
- 1 comment
#751 - Edited the MatchedFramgentIon Equals method
Pull Request -
State: closed - Opened by Alexander-Sol 10 months ago
- 1 comment
Labels: ready for final review / merge
#750 - Update uniprot comment
Pull Request -
State: closed - Opened by trishorts 10 months ago
- 1 comment
#749 - Eliminate extra tab from chromatographic peak
Pull Request -
State: closed - Opened by trishorts 10 months ago
- 1 comment
Labels: bug
#748 - Removed extra tab from peptide output in FlashLFQ
Pull Request -
State: closed - Opened by Alexander-Sol 10 months ago
#747 - Eliminate extra tab from chromatographic peak
Pull Request -
State: closed - Opened by trishorts 10 months ago
- 1 comment
Labels: bug
#746 - Machine learning project module
Pull Request -
State: open - Opened by elaboy 10 months ago
- 1 comment
#745 - Including a Machine learning project for ML/DL and the Chronologer Model
Pull Request -
State: closed - Opened by elaboy 10 months ago
- 1 comment
Labels: WIP
#744 - [WIP] Transciptomics: Digestion, Fragmentaiton, Decoy Generation
Pull Request -
State: closed - Opened by nbollis 10 months ago
- 1 comment
#743 - Rearranging classes to fit within the Transcriptomics Structure
Pull Request -
State: closed - Opened by nbollis 10 months ago
- 1 comment
Labels: enhancement, ready for review
#742 - Create CONTRIBUTING.md
Pull Request -
State: closed - Opened by trishorts 10 months ago
#741 - Create CODE_OF_CONDUCT.md
Pull Request -
State: closed - Opened by trishorts 10 months ago
#740 - [Do not merge] Incorporating Chronologer
Pull Request -
State: open - Opened by elaboy 11 months ago
- 1 comment
Labels: enhancement
#739 - Above Averaging Algorithm Rework and Crash Fix
Pull Request -
State: closed - Opened by nbollis 11 months ago
- 1 comment
Labels: bug, ready for review
#738 - IGNORE Chronologer tensor
Pull Request -
State: open - Opened by trishorts 11 months ago
#737 - PsmFromTsv Reader that also will work for RNA
Pull Request -
State: closed - Opened by trishorts 11 months ago
- 1 comment
Labels: Maintenance, ready for review
#736 - Allowed reading of scan descriptions from Raw Files
Pull Request -
State: closed - Opened by nbollis 12 months ago
- 1 comment
Labels: enhancement, ready for review
#735 - Toppic search result reading
Pull Request -
State: closed - Opened by nbollis 12 months ago
- 1 comment
Labels: enhancement, ready for review
#734 - From Private to Protected, allows control from inherited classes
Pull Request -
State: open - Opened by elaboy about 1 year ago
Labels: enhancement, WIP
#733 - Public method for replacing dictionary of mods in PeptideWithSetModifications
Pull Request -
State: closed - Opened by elaboy about 1 year ago
- 1 comment
Labels: Performance, WIP
#732 - snip those raw files
Pull Request -
State: open - Opened by trishorts about 1 year ago
#731 - Disabled Development Tests from Running Automatically
Pull Request -
State: closed - Opened by nbollis about 1 year ago
Labels: Maintenance, ready for review
#730 - EncyclopeDIA amodified peptides format mass shift
Pull Request -
State: closed - Opened by trishorts about 1 year ago
- 1 comment
#729 - Revert "Encyclopedia formated peptide full sequence including mass shift in brackets"
Pull Request -
State: closed - Opened by trishorts about 1 year ago
- 1 comment
#728 - Semi colon in protein group explanation
Pull Request -
State: closed - Opened by trishorts about 1 year ago
Labels: Documentation, ready for final review / merge
#727 - Reduced compexity of GetOneBasedScan from O(logN) to O(1)
Pull Request -
State: closed - Opened by nbollis about 1 year ago
- 1 comment
#726 - Encyclopedia formated peptide full sequence including mass shift in brackets
Pull Request -
State: closed - Opened by trishorts about 1 year ago
- 1 comment
Labels: enhancement, ready for review
#725 - Uniprot legacy comment update
Pull Request -
State: closed - Opened by trishorts about 1 year ago
Labels: Maintenance, ready for review
#724 - Legacy comment update
Issue -
State: open - Opened by acesnik about 1 year ago
- 1 comment
Labels: Documentation
#723 - Added support for negative mode deconvolution
Pull Request -
State: closed - Opened by nbollis about 1 year ago
- 1 comment
Labels: ready for review
#722 - Added method to check valid base sequences to AminoAcidPolymerExtensions
Pull Request -
State: closed - Opened by Alexander-Sol about 1 year ago
- 1 comment
#721 - Flash lfq robust to funny peptide sequence
Pull Request -
State: closed - Opened by trishorts about 1 year ago
- 1 comment
Labels: bug
#720 - [WIP] Indexed ion decon not working
Pull Request -
State: open - Opened by trishorts about 1 year ago
#719 - Fixed bug in GetClosestIndex for arrays of length 1 or 2
Pull Request -
State: closed - Opened by Alexander-Sol about 1 year ago
- 3 comments
#718 - [DO NOT MERGE] Base Implementation of Transcriptomics Project
Pull Request -
State: closed - Opened by nbollis about 1 year ago
- 1 comment
Labels: ready for review
#717 - Binary search extension
Pull Request -
State: closed - Opened by Alexander-Sol over 1 year ago
- 1 comment
#716 - GetClosestOneBasedSpectrumNumber using Binary Search instead of for loop
Pull Request -
State: closed - Opened by elaboy over 1 year ago
- 2 comments
Labels: Performance, Maintenance
#715 - fix gz decompress so that we get the complete xml database
Pull Request -
State: closed - Opened by trishorts over 1 year ago
- 1 comment
Labels: bug, WIP
#714 - Added comments to FlashLFQ
Pull Request -
State: closed - Opened by Alexander-Sol over 1 year ago
- 1 comment
#713 - Isobar indexing
Pull Request -
State: open - Opened by Alexander-Sol over 1 year ago
Labels: WIP
#712 - UnimodLoader throws KeyNotFoundException
Issue -
State: open - Opened by Alexander-Sol over 1 year ago
- 1 comment
#711 - External Software File Reading
Pull Request -
State: closed - Opened by nbollis over 1 year ago
- 1 comment
Labels: enhancement, ready for review
#710 - Binary search related bug in MzSpectrum.Extract
Issue -
State: open - Opened by avcarr2 over 1 year ago
- 2 comments
#709 - Raw file connection not closing
Pull Request -
State: closed - Opened by elaboy over 1 year ago
- 2 comments
Labels: bug, ready for review
#708 - Update Loaders.cs
Pull Request -
State: closed - Opened by elaboy over 1 year ago
- 1 comment
Labels: bug, ready for review
#707 - Fixed bug where pwsm.ChemicalFormula threw null reference exception
Pull Request -
State: closed - Opened by Alexander-Sol over 1 year ago
- 1 comment
Labels: bug, ready for review
#706 - Null ChemicalFormula throws NullReferenceException
Issue -
State: closed - Opened by Alexander-Sol over 1 year ago
#705 - removed the zero-equivalent intensity filtering from mzMl
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 5 comments
Labels: bug, WIP
#704 - Zero-equivalent intensities in MzML.GetOneBasedScanFromDynamicConnection
Issue -
State: open - Opened by avcarr2 over 1 year ago
#703 - Calculated number of averagines is only 1500
Issue -
State: open - Opened by avcarr2 over 1 year ago
#702 - Bruker support
Pull Request -
State: closed - Opened by avcarr2 over 1 year ago
- 3 comments
Labels: ready for review
#701 - mzML reader enforces order of MS1 and MS/MS spectra in the file
Issue -
State: open - Opened by andzajan over 1 year ago
#700 - Added option to quantify ambiguous peptides in FlashLFQ
Pull Request -
State: closed - Opened by Alexander-Sol over 1 year ago
- 1 comment