Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / smith-chem-wisc/MetaMorpheus issues and pull requests

#2236 - Edited ReadMe.md, deleting reference to .NET 5.0

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago

#2235 - MetaDraw settings not saving

Issue - State: closed - Opened by CEBoos about 2 years ago
Labels: GUI

#2234 - [WIP] user report memory expansion during calibration of multiple files

Pull Request - State: open - Opened by trishorts about 2 years ago - 1 comment
Labels: WIP

#2232 - Protein Inference for Glyco Search (1/2)

Pull Request - State: closed - Opened by trishorts about 2 years ago - 4 comments
Labels: New Feature, ready for review

#2231 - Fixed issue in MiniClassicSearchEngine

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago - 1 comment
Labels: Bug, ready for review

#2230 - [WIP] Add simple LFQ to glyco searches

Pull Request - State: closed - Opened by trishorts about 2 years ago - 1 comment
Labels: New Feature, WIP

#2229 - Make some edits of update spectral library function and some GUI

Pull Request - State: closed - Opened by YulingDai about 2 years ago - 1 comment

#2228 - Glycan Visualization Bug Fix

Pull Request - State: closed - Opened by nbollis about 2 years ago - 1 comment
Labels: ready for review

#2227 - Server installment only works when running as administrator

Issue - State: closed - Opened by ahi-ed about 2 years ago - 2 comments

#2226 - [WIP] LFQ functionality for the glyco search

Pull Request - State: closed - Opened by trishorts about 2 years ago - 1 comment
Labels: New Feature, WIP

#2225 - Wix test

Pull Request - State: closed - Opened by Alexander-Sol about 2 years ago

#2224 - Upgrade to WiX4. Boostrapper1 and MetaMorpheusSetup

Pull Request - State: closed - Opened by elaboy about 2 years ago - 13 comments
Labels: Maintenance, ready for review

#2223 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by trishorts about 2 years ago - 1 comment
Labels: ready for review

#2222 - Microsoft ml upgrade to version 2.0

Pull Request - State: closed - Opened by trishorts about 2 years ago
Labels: ready for review, dependencies

#2221 - Metamorpheus version number instead lists .NET version number

Issue - State: closed - Opened by Alexander-Sol about 2 years ago - 1 comment

#2220 - warnings from old unit tests have crept into appveyor.

Pull Request - State: closed - Opened by trishorts about 2 years ago - 1 comment
Labels: Long-Term Stability, ready for review

#2217 - New Installer WiX version 4

Pull Request - State: closed - Opened by elaboy about 2 years ago - 6 comments
Labels: WIP

#2216 - Upgrading to WiXV4

Pull Request - State: closed - Opened by elaboy about 2 years ago
Labels: WIP

#2215 - Write Spectral Library not working

Issue - State: closed - Opened by ChrisMcGann about 2 years ago - 1 comment

#2214 - WiXv4 upgrade test

Pull Request - State: closed - Opened by elaboy about 2 years ago - 1 comment
Labels: Packaging/Distributing

#2213 - Enable users to filter oxonium ions in ETD search

Pull Request - State: closed - Opened by lonelu about 2 years ago - 3 comments
Labels: Bug, ready for review

#2211 - Link does not work for Vignette: Bottom up mouse

Issue - State: closed - Opened by naviyas about 2 years ago - 2 comments

#2208 - Creating averaging task for MM

Pull Request - State: closed - Opened by nbollis about 2 years ago - 1 comment
Labels: WIP

#2198 - Problem visualizing nglyco

Issue - State: closed - Opened by ht-lau over 2 years ago - 4 comments
Labels: Bug

#2197 - update to peptide and psm count in results files

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment
Labels: Bug, Output Enhancement, ready for review

#2187 - option to use PEP as peptide filter for protein inference

Pull Request - State: open - Opened by trishorts over 2 years ago - 1 comment
Labels: New Feature, WIP

#2179 - Add Dissociation Type to File Specific Parameters.

Issue - State: closed - Opened by trishorts over 2 years ago - 1 comment

#2177 - 2173

Pull Request - State: closed - Opened by trishorts over 2 years ago

#2173 - WIP add water and ammonia loss fragment peak annotations and spectral library

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment
Labels: WIP

#2163 - Proteins in different samples types with the exact intensity values.

Issue - State: closed - Opened by AmirWIS over 2 years ago - 3 comments

#2148 - [WIP] Microsoft ml update

Pull Request - State: closed - Opened by trishorts over 2 years ago - 1 comment
Labels: WIP

#2145 - [WIP] remove references to x86

Pull Request - State: closed - Opened by trishorts almost 3 years ago - 3 comments
Labels: WIP

#2132 - Calibration bug occurs when one of many files fail to calibrate

Issue - State: closed - Opened by trishorts almost 3 years ago - 3 comments
Labels: Bug

#2128 - GitHub actions draft

Pull Request - State: closed - Opened by acesnik almost 3 years ago - 6 comments
Labels: good first issue, help requested, WIP

#2126 - O-Pair crashes specifically on one file

Issue - State: closed - Opened by Dmorgen almost 3 years ago - 1 comment
Labels: Bug

#2118 - Problem using viewer for N-glyco searches

Issue - State: closed - Opened by ValentinaRangelAngarita about 3 years ago - 2 comments
Labels: Bug

#2107 - Spectral library parallel

Pull Request - State: closed - Opened by trishorts about 3 years ago - 1 comment

#2101 - Question: How to filter the results by peptide FDR?

Issue - State: closed - Opened by grimace9527 over 3 years ago - 7 comments
Labels: Output Enhancement

#2099 - XL search "Max threads" cannot be set from GUI

Issue - State: closed - Opened by khal3dj over 3 years ago - 2 comments
Labels: GUI

#2095 - MetaDraw needs wiki

Issue - State: open - Opened by zrolfs over 3 years ago
Labels: Documentation

#2084 - Crosslink-opt2

Pull Request - State: closed - Opened by lonelu over 3 years ago

#2079 - Revert "PrSM output for top-down"

Pull Request - State: closed - Opened by rmmiller22 over 3 years ago

#2078 - Revert "quick fix file loading done"

Pull Request - State: closed - Opened by rmmiller22 over 3 years ago

#2076 - [WIP] spectral count per sequence per spectra file

Pull Request - State: closed - Opened by rmillikin over 3 years ago

#2060 - Restructure base directory

Pull Request - State: closed - Opened by acesnik almost 4 years ago - 8 comments
Labels: ready for final review+merge

#2059 - Decoy on the fly And Searching Match Ions with All Charges for decoy library generation

Pull Request - State: closed - Opened by YulingDai almost 4 years ago
Labels: ready for review

#2057 - Crosslink opt

Pull Request - State: closed - Opened by lonelu almost 4 years ago - 1 comment

#2056 - Library reader change to read pdeep and neutral loss

Pull Request - State: closed - Opened by YulingDai almost 4 years ago
Labels: ready for final review+merge

#2032 - Add support for Bruker Timstof Prot

Issue - State: open - Opened by trishorts almost 4 years ago - 8 comments
Labels: Input Enhancement

#1996 - [WIP] GPTMD task-friendly spectral libraries

Pull Request - State: closed - Opened by rmillikin about 4 years ago

#1986 - enable Pepxml

Pull Request - State: closed - Opened by lonelu over 4 years ago

#1963 - [WIP] ms2scanwithspecificmass streamer

Pull Request - State: closed - Opened by rmillikin over 4 years ago

#1956 - Simplifying base directory

Issue - State: closed - Opened by acesnik over 4 years ago - 1 comment

#1942 - [WIP] Proteoform truncation search

Pull Request - State: closed - Opened by rmillikin over 4 years ago

#1874 - [WIP] Parsimony and protein pvalue using peptide pep

Pull Request - State: closed - Opened by trishorts almost 5 years ago
Labels: WIP

#1330 - HTML reports

Issue - State: open - Opened by rmillikin over 6 years ago - 31 comments
Labels: Output Enhancement, New Feature

#21 - Validate calibrated mzML files give better results in other software

Issue - State: closed - Opened by stefanks about 8 years ago - 3 comments
Labels: Validation