Ecosyste.ms: Issues

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GitHub / smehringer/sviper issues and pull requests

#26 - [FIX] Fix vcf output by adding the filter info for SKIP.

Pull Request - State: closed - Opened by smehringer over 2 years ago

#25 - [FIX,DOC] Fix help page version to 2.1.0.

Pull Request - State: closed - Opened by smehringer over 2 years ago

#24 - [FIX] fix transform_cigar_right_into_insertion if ref_pos == until.

Pull Request - State: closed - Opened by smehringer over 2 years ago - 1 comment

#23 - Segmentation fault for few SVs

Issue - State: closed - Opened by Han-Cao over 2 years ago - 3 comments

#22 - some queries about SViper

Issue - State: open - Opened by prasundutta87 almost 3 years ago - 3 comments

#21 - encounter the memory allocation problem

Issue - State: open - Opened by shuliliu over 3 years ago - 3 comments

#20 - Installation error

Issue - State: open - Opened by aserres about 4 years ago - 4 comments

#19 - Move writing custom filter messages to a separate function so other t…

Pull Request - State: closed - Opened by joshuak94 about 5 years ago

#18 - Feature pbsv format

Pull Request - State: closed - Opened by smehringer about 5 years ago

#17 - Fix for empty sequence case in long reads.

Pull Request - State: closed - Opened by joshuak94 about 5 years ago

#16 - Add command to print option values to log file.

Pull Request - State: closed - Opened by joshuak94 about 5 years ago

#15 - Any chance of support for duplications and inversions?

Issue - State: closed - Opened by oneillkza about 5 years ago - 3 comments

#14 - Able to deal with the VCF file produced by PBSV?

Issue - State: closed - Opened by JunpengShi about 5 years ago - 8 comments
Labels: enhancement

#13 - Add threads and output prefix to option constructor.

Pull Request - State: closed - Opened by joshuak94 about 5 years ago - 3 comments

#12 - Bug fix

Pull Request - State: closed - Opened by joshuak94 about 5 years ago

#11 - Move all of include/ into include/SViper/, so that other projects can…

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 6 comments

#11 - Move all of include/ into include/SViper/, so that other projects can…

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 6 comments

#10 - Check first if SVLEN=- exists.

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 5 comments

#9 - Remove using namespace seqan

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 2 comments

#8 - Separate main function.

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 6 comments

#8 - Separate main function.

Pull Request - State: closed - Opened by joshuak94 over 5 years ago - 6 comments

#7 - [FIX] Remove quotation marks around FILTER field IDs in VCF output

Pull Request - State: closed - Opened by eldariont over 5 years ago

#6 - Command line parameters for FAIL5 thresholds

Issue - State: closed - Opened by eldariont over 5 years ago - 2 comments

#5 - Missing VCF header lines

Issue - State: closed - Opened by eldariont over 5 years ago - 7 comments
Labels: enhancement

#4 - [FIX] Hard-clips should not advance read_pos

Pull Request - State: closed - Opened by hannespetur almost 7 years ago - 1 comment

#3 - Use SViper without short reads

Issue - State: open - Opened by tungufoss about 7 years ago - 5 comments
Labels: enhancement

#2 - [README, MINOR, FIX, PLEASE, INTERNAL] Incorrect git link

Issue - State: closed - Opened by hannespetur about 7 years ago - 3 comments
Labels: good first issue

#1 - SViper 2.0.0

Pull Request - State: closed - Opened by smehringer about 7 years ago