Ecosyste.ms: Issues

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GitHub / smdabdoub/phylotoast issues and pull requests

#69 - How to remove/move legend in PCoA plots

Issue - State: closed - Opened by kali1819 almost 3 years ago - 1 comment

#68 - Dimensionality Reduction Updates

Pull Request - State: closed - Opened by akshayparopkari over 7 years ago - 1 comment
Labels: bug, enhancement, documentation

#67 - Updates

Pull Request - State: closed - Opened by akshayparopkari over 7 years ago
Labels: bug, duplicate, enhancement

#66 - PCoA and LDA updates

Pull Request - State: closed - Opened by akshayparopkari over 7 years ago
Labels: bug, enhancement

#65 - Updated documentation files

Pull Request - State: closed - Opened by akshayparopkari over 7 years ago
Labels: documentation

#64 - AttributeError: 'module' object has no attribute 'rstyle'

Issue - State: closed - Opened by bstamps over 7 years ago - 2 comments

#63 - Updates to extract_shared_or_unique_otuids.py and filter_biom.py and test scripts.

Pull Request - State: closed - Opened by akshayparopkari about 8 years ago
Labels: enhancement

#62 - Various updates for new release

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement, documentation

#61 - PCoA minor updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement, documentation

#60 - PCoA updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago - 2 comments
Labels: enhancement

#59 - LDA updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement, documentation

#58 - Updated diversity.py and network_plots_gephi.py

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: bug, enhancement

#57 - Adding templates for Issues and PR.

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: documentation

#56 - Updated documentation for PCoA_bubble script and fixed a bug in extract_shared_or_unique_otuids.py script

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: bug, documentation

#55 - Updated extract_shared_or_unique_otuids.py

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#54 - Documentation updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement, documentation

#53 - Updated diversity.py and added network_plots_gephi.py

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement

#52 - diversity.py updates and extract_uniques.py added

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago
Labels: enhancement

#51 - New script added.

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: duplicate, enhancement

#50 - Switch to Python3

Issue - State: open - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: enhancement

#49 - Integrating network analysis into PhyloToAST

Issue - State: open - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: enhancement

#48 - Alpha diversity

Issue - State: closed - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: enhancement

#47 - LDA/PCoA update

Issue - State: open - Opened by akshayparopkari over 8 years ago - 2 comments
Labels: enhancement, documentation

#46 - Machine Learning Updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#45 - Add error handling to otu_to_tax_name.py.

Issue - State: open - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: enhancement

#43 - Visualization updates

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#42 - Update PCoA_bubble

Issue - State: closed - Opened by smdabdoub over 8 years ago - 1 comment
Labels: enhancement

#41 - Replace brewer2mpl

Issue - State: closed - Opened by smdabdoub over 8 years ago - 1 comment
Labels: enhancement

#40 - Updates to error checking.

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#39 - Updated otu_to_tax_name.py

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#38 - Update otu_to_tax_name.py

Issue - State: closed - Opened by akshayparopkari over 8 years ago - 1 comment
Labels: enhancement

#37 - Test updates.

Pull Request - State: closed - Opened by akshayparopkari over 8 years ago

#36 - iTol.py and PCoA.py updates

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#35 - Updates to documentation.

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#34 - Util and documentation updates.

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#33 - Git handling and iTol issue.

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#32 - Merge upstream to local branch and update util.py testing.

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#31 - Updated iTol.py

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#30 - PCoA.py and PCoA_bubble.py do not support the new UniFrac file format in QIIME 1.9

Issue - State: closed - Opened by smdabdoub almost 9 years ago - 1 comment

#29 - phylotoast is not in PyPI

Issue - State: closed - Opened by mthon almost 9 years ago - 5 comments

#28 - Updated biom file format handling

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#27 - iTol.py: No warning given if mapping file sample IDs are not in the BIOM table

Issue - State: closed - Opened by smdabdoub almost 9 years ago - 2 comments
Labels: enhancement

#26 - Edits to LDA.py

Pull Request - State: closed - Opened by akshayparopkari almost 9 years ago

#25 - Merge pull request #2 from smdabdoub/master

Pull Request - State: closed - Opened by akshayparopkari over 9 years ago

#24 - Updates to phylotoast

Pull Request - State: closed - Opened by akshayparopkari over 9 years ago

#23 - Updated test_biom_calc.py

Pull Request - State: closed - Opened by akshayparopkari over 9 years ago

#22 - Merge pull request #1 from smdabdoub/master

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#21 - Addition and edits to phylotoast bin and API scripts

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#20 - Changed "qiime_tools" to "phylotoast"

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#19 - Updates for qiime-tools 1.1.3

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#18 - Updated otu_condense.py

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#17 - Updated merge_otu_results.py (v1.1.3)

Pull Request - State: closed - Opened by akshayparopkari almost 10 years ago

#16 - Modified qiime-tools bin scripts.

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#15 - Updates to util.py and otu_calc.py

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#14 - Modified parse_map_file() function

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#13 - Updates to API test scripts [ci skip]

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#12 - Multiple edits

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#10 - Modify parse_map_file()

Issue - State: closed - Opened by akshayparopkari about 10 years ago - 1 comment

#9 - Changes to biom_summary() function

Issue - State: closed - Opened by akshayparopkari about 10 years ago - 2 comments

#8 - Editing raw_abundance() in biom_calc.py

Issue - State: closed - Opened by akshayparopkari about 10 years ago - 2 comments

#7 - Removing relative_abundance() from otu_calc.py

Issue - State: closed - Opened by akshayparopkari about 10 years ago - 2 comments

#6 - Updated test_biom_calc.py

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#5 - Updated to test_biom_calc.py

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#4 - Unit testing biom_calc.py

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#3 - Updates to util.py and test_util.py.

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago

#2 - Updates to util.py and test_util.py.

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago - 1 comment

#1 - Created and updated docstring for split_phylogeny()

Pull Request - State: closed - Opened by akshayparopkari about 10 years ago