Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / smdabdoub/kraken-biom issues and pull requests

#26 - Can you add a new version tag to cite properly?

Issue - State: open - Opened by azmigueldario over 1 year ago

#25 - Question Regarding Read Assignments in Biom Files

Issue - State: open - Opened by Tonny-zhou over 1 year ago

#24 - It seems that unclassified reads are ignored

Issue - State: open - Opened by claczny over 1 year ago - 1 comment

#23 - Include taxonomic levels below species

Issue - State: open - Opened by Pstege over 1 year ago - 2 comments

#22 - New release needed

Issue - State: open - Opened by bgruening about 2 years ago - 1 comment

#21 - empty .biom files from normal-looking bracken reports?

Issue - State: open - Opened by mawa86 over 2 years ago - 4 comments

#20 - Add sample_data info to biom file

Issue - State: open - Opened by Ptero64 over 2 years ago - 4 comments

#19 - Abundance calculation question

Issue - State: closed - Opened by Valentin-Bio-zz over 2 years ago - 1 comment

#17 - Errors while using kraken-biom

Issue - State: open - Opened by pdhrati02 almost 3 years ago

#15 - Updating conda and PyPI

Issue - State: open - Opened by ctanes almost 3 years ago - 2 comments

#14 - add dockerfile to install options

Pull Request - State: closed - Opened by shaunchuah about 3 years ago - 1 comment

#13 - Instructions

Issue - State: closed - Opened by rebeelouise over 4 years ago - 5 comments

#12 - biom file not working with Phinch

Issue - State: closed - Opened by LeonardosMageiros almost 5 years ago - 3 comments

#11 - Add metadata to biom table

Pull Request - State: closed - Opened by casperp over 5 years ago

#10 - kraken2?

Issue - State: open - Opened by raw937 over 6 years ago - 21 comments

#9 - Fix taxonomy parsing

Pull Request - State: closed - Opened by ressy over 6 years ago - 1 comment

#8 - it will be great to share the testing examples

Issue - State: closed - Opened by gc26762524 over 6 years ago - 1 comment

#7 - Only keep one taxonomic rank

Pull Request - State: closed - Opened by maxibor over 6 years ago - 1 comment

#6 - Option to take folder with kraken reports

Pull Request - State: closed - Opened by eclarke over 6 years ago - 1 comment

#5 - Compatibility with krakenhll

Issue - State: open - Opened by fconstancias almost 7 years ago - 1 comment

#4 - Taxonomic hierarchy incorrect for certain cases

Issue - State: closed - Opened by ressy about 7 years ago - 8 comments
Labels: bug

#3 - Setting --max and --min to the same level causes an error.

Issue - State: closed - Opened by smdabdoub over 7 years ago - 1 comment
Labels: bug

#2 - compatibility with bracken

Issue - State: closed - Opened by ajaybabu27 over 7 years ago - 5 comments

#1 - Update documentation to reflect executable name change

Issue - State: closed - Opened by smdabdoub over 7 years ago - 1 comment
Labels: documentation