smaret/astrochem issues and pull requests

#98 - Implement grain-charge reactions

Pull Request - State: open - Opened by smaret 6 months ago

#96 - Grain size units in the Python interface are confusing

Issue - State: open - Opened by smaret over 1 year ago
Labels: bug, documentation

#94 - No module named 'astrochem'

Issue - State: closed - Opened by tty1105 almost 2 years ago - 5 comments

#93 - Build error with Python 3.10

Issue - State: closed - Opened by smaret over 2 years ago

#92 - Can't read network files with tabs instead of spaces between species

Issue - State: open - Opened by smaret about 3 years ago
Labels: bug, low priority

#91 - plroute does not list available species in the output file

Issue - State: open - Opened by smaret about 3 years ago
Labels: bug, low priority

#90 - Confusing message displayed by plroute when the output file contains no routes

Issue - State: open - Opened by smaret about 3 years ago
Labels: bug, low priority

#88 - Compilation error with the latest SUNDIALS version (6.0.0)

Issue - State: open - Opened by smaret about 3 years ago
Labels: enhancement, low priority

#86 - Astrochem compilation error

Issue - State: closed - Opened by TuTianYu about 3 years ago - 8 comments

#85 - Initial abundances are not correctly set by the Python module

Issue - State: closed - Opened by smaret over 3 years ago
Labels: bug, high priority

#84 - make check fail: python_lib_test

Issue - State: open - Opened by erikneyts about 4 years ago - 7 comments

#83 - Installation on ubuntu using anaconda

Issue - State: closed - Opened by christer-watson almost 5 years ago - 3 comments
Labels: bug

#82 - Support SUNDIALS 4.1.0 and newer

Pull Request - State: closed - Opened by smaret about 5 years ago

#81 - Use Matplotlib instead of Biggles

Pull Request - State: closed - Opened by smaret about 5 years ago

#80 - Add nix support for development

Pull Request - State: closed - Opened by smaret over 5 years ago

#79 - test suite execution fails (unable to open file h5f.pyx

Issue - State: open - Opened by hwiesemeyer over 5 years ago - 2 comments

#78 - solve.c:334:57: error: use of undeclared identifier 'CV_NEWTON'

Issue - State: closed - Opened by qiujianjie almost 6 years ago - 2 comments

#77 - Runtime error: error while loading shared libraries

Issue - State: closed - Opened by smaret about 6 years ago - 2 comments
Labels: bug, high priority

#76 - Compilation fails because of missing hdf5.h header file

Issue - State: open - Opened by smaret about 6 years ago
Labels: bug, low priority

#75 - Buffer overflow error on Ubuntu with gcc 7.3.0

Issue - State: closed - Opened by smaret about 6 years ago - 1 comment
Labels: bug

#74 - Problem with MAKE CHECK

Issue - State: closed - Opened by Ramiroddddddd over 6 years ago

#73 - error (?) in wiki install ubuntu

Issue - State: closed - Opened by neutrinoceros over 6 years ago - 1 comment
Labels: documentation

#72 - linking broken on linux

Issue - State: closed - Opened by neutrinoceros over 6 years ago
Labels: bug

#71 - Support SUNDIALS 4 and newer

Issue - State: closed - Opened by smaret almost 7 years ago - 1 comment
Labels: bug, high priority

#70 - Linear and Ciclic molecules in KIDA database

Issue - State: open - Opened by willastro about 7 years ago
Labels: bug

#69 - Suffix parameter in input file is ignored

Issue - State: open - Opened by smaret almost 8 years ago
Labels: bug, low priority

#68 - Compiling issue with typedef enum

Issue - State: closed - Opened by diskmodeling almost 8 years ago - 8 comments
Labels: bug

#67 - Network file reading function needs to be rewritten

Issue - State: open - Opened by smaret about 8 years ago - 1 comment
Labels: design, low priority

#66 - HDF5 error message when no species are selected in output

Issue - State: open - Opened by smaret about 8 years ago
Labels: bug, low priority

#65 - Segfault when the number of species is lower or equal than 2

Issue - State: closed - Opened by smaret about 8 years ago - 2 comments
Labels: bug

#64 - New line at the end of the chemistry model causes a segfault

Issue - State: closed - Opened by smaret about 8 years ago - 1 comment
Labels: bug

#63 - Convergence error with time dependent models

Issue - State: closed - Opened by smaret about 8 years ago - 2 comments
Labels: bug

#62 - Cryptic message if no network is provided

Issue - State: open - Opened by smaret about 8 years ago - 1 comment
Labels: bug, low priority

#61 - Importing libpyastrochem fails under Python 3

Issue - State: closed - Opened by smaret over 8 years ago
Labels: bug

#60 - Convert species names in Python 3 from byte litterals to simple strings

Issue - State: closed - Opened by smaret over 8 years ago
Labels: bug

#59 - Some grain parameters are missing from the Python API

Issue - State: open - Opened by smaret over 8 years ago - 1 comment
Labels: bug

#58 - Test suite fails if Cython is missing

Issue - State: open - Opened by smaret over 8 years ago
Labels: bug

#57 - FORTRAN compiler isn't optional

Issue - State: closed - Opened by smaret over 8 years ago - 1 comment
Labels: bug

#56 - Problems with "libpyastrochem.la" and non-root installation

Issue - State: closed - Opened by johnilee over 8 years ago - 3 comments
Labels: awaiting update

#55 - Better treatment for the grain charge and neutralization

Pull Request - State: closed - Opened by smaret over 8 years ago - 1 comment

#54 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger over 8 years ago - 1 comment

#53 - Python interface and command line give different results

Issue - State: closed - Opened by smaret over 8 years ago - 4 comments
Labels: bug

#52 - Python solve() function second argument isn't optional

Issue - State: closed - Opened by smaret over 8 years ago
Labels: bug

#51 - Python interface segfaults if network isn't found

Issue - State: closed - Opened by smaret over 8 years ago
Labels: bug

#50 - Routes are incorrectly read when h5py 2.6.0 is used

Issue - State: closed - Opened by smaret over 8 years ago - 2 comments
Labels: bug

#49 - Python library test fails if 'make check' is invoked before 'make install'

Issue - State: closed - Opened by smaret over 8 years ago
Labels: bug

#48 - Can't convert KIDA 2014 network to Astrochem format

Issue - State: closed - Opened by BhaswatiMookerjea almost 9 years ago - 1 comment
Labels: invalid

#47 - Not finding libastrochem.so.0

Issue - State: closed - Opened by BhaswatiMookerjea almost 9 years ago - 6 comments
Labels: bug, low priority

#46 - Include the 'configure' and 'Makefile.am' files in the repository?

Issue - State: closed - Opened by smaret over 9 years ago - 1 comment
Labels: enhancement

#45 - Use matplotlib instead of biggles

Issue - State: closed - Opened by smaret over 9 years ago
Labels: enhancement, high priority

#44 - Installation error with BSD sed

Issue - State: closed - Opened by smaret over 9 years ago
Labels: bug

#43 - Fix new grain implementation

Pull Request - State: closed - Opened by glesur over 9 years ago - 2 comments

#42 - Convergence error when the grain abundance is set to zero

Issue - State: closed - Opened by smaret over 9 years ago
Labels: bug

#41 - HDF5 error message

Issue - State: closed - Opened by smaret over 9 years ago - 2 comments
Labels: bug

#40 - Fix bug #39

Pull Request - State: closed - Opened by smaret over 9 years ago

#39 - Networks with depletion on grains are not properly read

Issue - State: closed - Opened by smaret over 9 years ago
Labels: bug

#38 - Convert the KIDA UVA 2014 network to Astrochem format

Pull Request - State: open - Opened by smaret almost 10 years ago - 3 comments
Labels: enhancement

#37 - Cleanup the codebase

Issue - State: open - Opened by smaret almost 10 years ago
Labels: design

#36 - Remove functions and types that are not part of the C API from libastrochem.h

Issue - State: closed - Opened by smaret almost 10 years ago
Labels: bug

#35 - Document the C and Python APIs

Pull Request - State: closed - Opened by smaret almost 10 years ago
Labels: documentation

#34 - Add a description on the new output format in the user manual

Issue - State: closed - Opened by smaret about 10 years ago - 1 comment
Labels: documentation

#33 - Document the grain properties

Issue - State: closed - Opened by smaret about 10 years ago
Labels: documentation

#32 - Add missing dependencies in the installation instructions

Issue - State: closed - Opened by smaret about 10 years ago
Labels: documentation

#31 - Document the C and Python APIs

Issue - State: closed - Opened by smaret about 10 years ago
Labels: documentation

#30 - Move the documentation to ReadtheDocs

Pull Request - State: closed - Opened by smaret about 10 years ago - 1 comment

#29 - Move the documentation to Read the Docs

Issue - State: closed - Opened by smaret about 10 years ago
Labels: enhancement

#28 - Correcting incorrect jacobian signature

Pull Request - State: closed - Opened by mwestphal over 10 years ago - 3 comments

#27 - Support Python 3

Pull Request - State: closed - Opened by smaret over 10 years ago

#26 - Compilation fails with Python >= 3

Issue - State: closed - Opened by smaret over 10 years ago - 1 comment
Labels: bug

#25 - bibtex failure

Issue - State: closed - Opened by mwestphal over 10 years ago
Labels: bug

#24 - fig1.pdf and fig2.pdf missing from doc folder

Issue - State: closed - Opened by mwestphal over 10 years ago
Labels: bug

#23 - Support Python 3

Issue - State: closed - Opened by smaret over 10 years ago - 3 comments
Labels: enhancement

#22 - osu2009.chm missing in example

Issue - State: closed - Opened by mwestphal over 10 years ago - 1 comment

#21 - Incomplete path to Python modules in plabun, plroute and chmconvert

Issue - State: closed - Opened by smaret about 11 years ago - 2 comments
Labels: bug

#20 - Implement time-dependant sources

Issue - State: closed - Opened by smaret about 11 years ago
Labels: enhancement

#19 - Clarify the radiation field units in the documentation

Issue - State: closed - Opened by smaret about 11 years ago - 1 comment
Labels: documentation

#18 - Compute the electron abundance in the code

Issue - State: closed - Opened by smaret about 11 years ago
Labels: enhancement

#17 - Implement a new output format

Issue - State: closed - Opened by smaret about 11 years ago
Labels: enhancement

#16 - Define and implement a C and Fortran API for Astrochem

Issue - State: closed - Opened by smaret about 11 years ago
Labels: enhancement

#15 - Compute the grain abundance from the grain properties

Issue - State: closed - Opened by smaret about 11 years ago
Labels: enhancement

#14 - Data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago

#13 - Data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago

#12 - Data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago

#11 - Smaret data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago - 1 comment

#10 - openmp configure

Issue - State: open - Opened by mwestphal over 11 years ago - 8 comments
Labels: bug

#9 - Dynamic allocation of data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago

#8 - Use of typedef struct instead of struct alone

Pull Request - State: closed - Opened by mwestphal over 11 years ago

#7 - out of source build

Issue - State: closed - Opened by mwestphal over 11 years ago - 2 comments

#6 - Warning with sundials 2.5

Issue - State: closed - Opened by mwestphal over 11 years ago - 1 comment
Labels: bug

#5 - ./bootstrap warning with recent autoconf

Issue - State: closed - Opened by mwestphal over 11 years ago

#4 - Implement functions that use the new data structures

Pull Request - State: closed - Opened by mwestphal over 11 years ago - 4 comments

#3 - Numpy dependencies

Issue - State: closed - Opened by mwestphal almost 12 years ago

#2 - SUNDIALS/CVCODE version check

Issue - State: closed - Opened by mwestphal almost 12 years ago - 1 comment
Labels: bug

#1 - Untitled

Issue - State: closed - Opened by smaret about 14 years ago

GitHub / smaret/astrochem issues and pull requests