slowkow/harmonypy issues and pull requests

#36 - Update author info

Pull Request - State: closed - Opened by johnarevalo 3 months ago

#35 - Any plan to release 0.0.10 ?

Issue - State: closed - Opened by johnarevalo 3 months ago - 4 comments

#34 - TypeError: 'float' object is not subscriptable

Issue - State: closed - Opened by bholmes-datasight 4 months ago - 3 comments

#33 - Will the latest R harmony updates be propagated to the harmonypy

Issue - State: open - Opened by deevdevil88 8 months ago - 1 comment
Labels: enhancement

#32 - Error in running large dataset

Issue - State: closed - Opened by zhou-1314 9 months ago - 2 comments

#31 - AttributeError: 'NoneType' object has no attribute 'split'

Issue - State: closed - Opened by VivianQM 11 months ago - 5 comments

#30 - Reference mapping option

Issue - State: closed - Opened by dhoanghiep about 1 year ago - 2 comments
Labels: question

#29 - sklearn.cluster.KMeans issue with kmeans_single() and threadpool_limits()

Issue - State: closed - Opened by shivamjgandhi over 1 year ago - 4 comments

#28 - Fix test for python 3.6. seed param not allowed in old kmeans2

Pull Request - State: closed - Opened by johnarevalo over 1 year ago - 1 comment

#27 - Add github workflow to run tests

Pull Request - State: closed - Opened by johnarevalo over 1 year ago

#26 - To add back the kmeans2 method as an alternative option for reproducibitlity

Pull Request - State: closed - Opened by hurleyLi over 1 year ago - 1 comment

#25 - Fix #24. Add random_state to kmeans, test added.

Pull Request - State: closed - Opened by johnarevalo over 1 year ago - 3 comments

#24 - Results not reproducible

Issue - State: closed - Opened by hurleyLi over 1 year ago - 18 comments

#23 - Add converged status to harmony object

Issue - State: closed - Opened by potulabe over 1 year ago - 1 comment

#22 - Unique key is not in pandas describe

Issue - State: closed - Opened by Arkkienkeli almost 2 years ago - 3 comments

#21 - Build changes have broken Conda install

Issue - State: closed - Opened by pinin4fjords almost 2 years ago - 1 comment

#20 - Use sklearn.cluster.KMeans for init

Pull Request - State: closed - Opened by johnarevalo almost 2 years ago - 4 comments

#19 - Harmony with two or more covariates

Issue - State: closed - Opened by Sayyam-Shah about 2 years ago - 3 comments

#18 - Runharmony with R and run_harmony with Python produced different results

Issue - State: closed - Opened by zy-fang over 2 years ago - 1 comment
Labels: question

#17 - fully typed

Pull Request - State: closed - Opened by milescsmith over 2 years ago - 1 comment

#16 - Running multiple instances of the same variable in vars_use.

Issue - State: closed - Opened by FFB-Lab over 2 years ago - 5 comments

#15 - run harmonypy true_divide error

Issue - State: closed - Opened by gmoore5 almost 3 years ago - 3 comments

#14 - feature request:

Issue - State: closed - Opened by dangeles over 3 years ago - 2 comments

#13 - How to get the result after running harmony?

Issue - State: closed - Opened by HelloWorldLTY over 3 years ago - 2 comments

#12 - ValueError: operands could not be broadcast together

Issue - State: closed - Opened by swemeshy over 3 years ago - 1 comment

#11 - Feature request: plot convergence

Issue - State: closed - Opened by JATC1024 over 3 years ago - 1 comment
Labels: enhancement

#10 - ValueError: operands could not be broadcast together with shapes

Issue - State: closed - Opened by DennisPost10 over 3 years ago - 9 comments

#9 - How to cite this work?

Issue - State: closed - Opened by burtonrj over 3 years ago - 2 comments

#8 - Improve use of max_iter_harmony + max_iter_kmeans

Pull Request - State: closed - Opened by pinin4fjords about 4 years ago - 4 comments

#7 - Try filprofiler

Issue - State: open - Opened by slowkow about 4 years ago - 1 comment
Labels: enhancement

#6 - Question re variance explained from harmony-corrected components

Issue - State: closed - Opened by kathrinjansen over 4 years ago - 4 comments
Labels: question

#5 - Harmonypy results with anndata

Issue - State: closed - Opened by 321356766 over 4 years ago - 4 comments

#4 - Error when trying to run Harmony with multiple covariates

Issue - State: closed - Opened by liboxun over 4 years ago - 3 comments

#3 - Failed to set number of max iterations to more than 10

Issue - State: closed - Opened by liboxun over 4 years ago - 2 comments

#2 - Merge pull request #2 from lilab-bcb/master

Pull Request - State: closed - Opened by bli25 over 4 years ago - 1 comment

#1 - Fix break in lisi computation

Pull Request - State: closed - Opened by tariqdaouda over 4 years ago - 1 comment

Ecosyste.ms: Issues

GitHub / slowkow/harmonypy issues and pull requests