Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sizespectrum/mizer issues and pull requests

#99 - Take unstructured resources out of mizer

Issue - State: closed - Opened by gustavdelius over 5 years ago
Labels: core

#97 - Saving initial effort in MizerParams object

Pull Request - State: closed - Opened by gustavdelius over 5 years ago - 1 comment

#96 - Rename r max

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#95 - Make plots faster by including fewer points

Issue - State: closed - Opened by gustavdelius over 5 years ago - 1 comment
Labels: enhancement, plots, help wanted

#94 - Improve and document handling of linecolour and linetype

Issue - State: open - Opened by gustavdelius over 5 years ago - 1 comment
Labels: enhancement, plots, help wanted

#93 - Set good default for gamma for any predation kernel

Issue - State: closed - Opened by gustavdelius over 5 years ago
Labels: enhancement, setting parameters, minor effort

#92 - Make allometric exponents species-specific

Issue - State: closed - Opened by gustavdelius over 5 years ago - 2 comments
Labels: enhancement, setting parameters, discussion, minor effort

#91 - Problem with srr slot when sharing saved params objects

Issue - State: closed - Opened by gustavdelius over 5 years ago - 2 comments
Labels: bug, discussion, core

#90 - Set initial values in example parameter objects to steady state

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#89 - Initialise example params objects to steady state

Issue - State: closed - Opened by gustavdelius over 5 years ago - 6 comments
Labels: enhancement, minor effort

#88 - Saving initial effort in MizerParams object

Issue - State: closed - Opened by gustavdelius over 5 years ago - 3 comments
Labels: enhancement, setting parameters, core, minor effort

#87 - Infrastructure for mizer extensions

Issue - State: closed - Opened by gustavdelius over 5 years ago - 3 comments
Labels: enhancement, discussion, core, major effort

#86 - Stock-recruitment relationships that include Allee effect

Issue - State: closed - Opened by astaaudzi over 5 years ago - 8 comments
Labels: discussion

#85 - Allowing flexible number of (background) resource spectra

Issue - State: closed - Opened by astaaudzi over 5 years ago - 1 comment
Labels: enhancement

#84 - Inserting missing ")" in the developer vignette

Pull Request - State: closed - Opened by patricksykes over 5 years ago - 1 comment

#83 - Setting up multiple gears per species

Issue - State: closed - Opened by michaelspence over 5 years ago - 14 comments
Labels: enhancement, setting parameters, documentation

#82 - r_max -> R_max

Issue - State: closed - Opened by Kenhasteandersen over 5 years ago - 2 comments
Labels: documentation

#81 - Fix mizer new option

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#80 - Update documentation for r_pp

Pull Request - State: closed - Opened by jaseeverett over 5 years ago - 5 comments

#79 - Build model notebooks

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#78 - First part of building_model

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#77 - test from Asta

Pull Request - State: closed - Opened by astaaudzi over 5 years ago - 1 comment

#76 - Added some documentation to power_law_pred_kernel()

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#75 - New function rescaleSystem()

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#74 - Changes in preparation for Lysekil

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#73 - In project() revert back to default value effort = 0

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#72 - New predation kernel function appropriate for filter feeders.

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#71 - Various improvements

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#70 - Fixes to plots

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#69 - New selectivity function double_sigmoid_length

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#68 - New function upgradeParams()

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#67 - Adding data file with a MizerParams object for the North Sea model.

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#66 - Updated URL to https://sizespectrum.org/mizer/

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#65 - Adding spell check

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#64 - Remove print_it argument from all plot functions

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#63 - Good colour palette for line plots

Issue - State: closed - Opened by gustavdelius over 5 years ago - 3 comments
Labels: question

#62 - Remove the print_it option from plots

Issue - State: closed - Opened by gustavdelius over 5 years ago - 1 comment

#61 - Restrict plot of feeding level to size range of each species

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#60 - Some tweaks and bug fixes

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#59 - Some bug fixes

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#58 - Tiny change to documentation of getEncounter()

Pull Request - State: closed - Opened by gustavdelius over 5 years ago

#57 - Correction and improvement of getDiet()

Pull Request - State: closed - Opened by gustavdelius almost 6 years ago

#56 - Stop using S4 classes

Issue - State: open - Opened by gustavdelius almost 6 years ago - 4 comments
Labels: discussion, core, low priority

#55 - Move development code to master branch

Pull Request - State: closed - Opened by gustavdelius almost 6 years ago

#54 - Comparison between Ecopath with Ecosim and Mizer

Issue - State: open - Opened by gustavdelius almost 6 years ago - 2 comments
Labels: enhancement

#53 - plotYieldCurve()

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 4 comments
Labels: enhancement, plots

#52 - First version of website for released version of mizer

Pull Request - State: closed - Opened by gustavdelius almost 6 years ago

#51 - Functions for changing model parameters

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 3 comments
Labels: enhancement

#50 - Prey-dependent assimilation rates

Issue - State: open - Opened by gustavdelius almost 6 years ago
Labels: enhancement, discussion, core, extension

#49 - Multiple size-structured resource components

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 1 comment
Labels: enhancement, core, extension

#48 - Website with package documentation

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 7 comments
Labels: enhancement

#47 - How to define spawning stock biomass

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 3 comments
Labels: bug

#46 - Modelling of unstructured resources in mizer

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 10 comments
Labels: enhancement

#45 - Save mizer version and metadata in MizerParams object

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 8 comments
Labels: enhancement, discussion

#44 - Issues #39, #43, #40

Pull Request - State: closed - Opened by gustavdelius almost 6 years ago

#43 - Function to get diet of predator

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 10 comments
Labels: enhancement

#42 - What units to use in mizer

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 8 comments

#40 - Allow feeding kernel to be kept in MizerParams object even when using FFT method

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 4 comments

#39 - Remove discrepancies between FFT method and old method for calculating integrals

Issue - State: closed - Opened by gustavdelius almost 6 years ago - 16 comments

#38 - Stochasticity

Issue - State: open - Opened by juliablanchard about 6 years ago - 2 comments
Labels: discussion

#37 - Starvation mortality

Issue - State: closed - Opened by astaaudzi over 6 years ago - 1 comment
Labels: enhancement, core

#36 - Adding starvation mortality

Pull Request - State: closed - Opened by astaaudzi over 6 years ago - 1 comment
Labels: enhancement, core

#35 - attempted to add getSMort, but it does not work yet

Pull Request - State: closed - Opened by astaaudzi over 6 years ago

#34 - Started explaining new project from Git

Pull Request - State: closed - Opened by astaaudzi over 6 years ago - 1 comment

#33 - Dev

Pull Request - State: closed - Opened by astaaudzi over 6 years ago - 1 comment

#32 - Version of mizer with methods replaced by functions

Pull Request - State: closed - Opened by gustavdelius over 6 years ago

#31 - Ready for a new release

Pull Request - State: closed - Opened by gustavdelius almost 7 years ago

#30 - Improvements to scaling model and plotting

Pull Request - State: closed - Opened by gustavdelius almost 7 years ago

#29 - Pushed to the wrong repository. Reverting.

Pull Request - State: closed - Opened by gustavdelius almost 7 years ago

#27 - Some bug fixes

Pull Request - State: closed - Opened by gustavdelius about 7 years ago

#26 - Ready for new CRAN release

Pull Request - State: closed - Opened by gustavdelius about 7 years ago

#25 - Automated checking with Travis-CI

Pull Request - State: closed - Opened by gustavdelius about 7 years ago

#24 - Made section 3 of the vignette agree closely with the code.

Pull Request - State: closed - Opened by gustavdelius about 7 years ago - 1 comment

#23 - Starvation mortality not implemented

Issue - State: closed - Opened by gustavdelius about 7 years ago - 3 comments

#22 - Difference between metabolic rate and activity rate

Issue - State: closed - Opened by gustavdelius about 7 years ago - 2 comments

#21 - Rewrote inner loop in C++

Pull Request - State: closed - Opened by gustavdelius about 7 years ago - 1 comment

#20 - Speed improvements by evaluating convolution sums via fft

Pull Request - State: closed - Opened by gustavdelius about 7 years ago

#19 - Correction to expression for gamma in vignette

Pull Request - State: closed - Opened by gustavdelius about 7 years ago

#18 - Development documentation

Pull Request - State: closed - Opened by gustavdelius about 7 years ago - 1 comment

#17 - Merged

Pull Request - State: closed - Opened by richardsouthwell about 7 years ago

#16 - Small change to vignette

Pull Request - State: closed - Opened by gustavdelius over 7 years ago

#15 - Fixed missing subscript on predation kernel in formula for mortality rate

Pull Request - State: closed - Opened by gustavdelius almost 8 years ago - 1 comment

#14 - Corrected a small error in the definition of dw and dw_full

Pull Request - State: closed - Opened by richardsouthwell almost 8 years ago

#13 - Fixed some typos in the description of the model

Pull Request - State: closed - Opened by gustavdelius about 8 years ago

#12 - Changed cat() to message() in MizerParams() to clean up test output

Pull Request - State: closed - Opened by gustavdelius over 9 years ago

#11 - Transfer of mizer to https://github.com/sizespectrum

Issue - State: closed - Opened by gustavdelius over 9 years ago - 3 comments

#10 - Some cleanup of code documentation and vignette

Pull Request - State: closed - Opened by gustavdelius over 9 years ago

#9 - Further development of mizer as part of EU Horizon 2020 project MINOUW

Issue - State: closed - Opened by gustavdelius almost 10 years ago - 1 comment

#8 - Minor changes to documentation

Pull Request - State: closed - Opened by gustavdelius over 10 years ago

#7 - Incorrect description of boundary condition in vignette

Issue - State: closed - Opened by gustavdelius over 10 years ago - 2 comments

#6 - Using knitr for vignette

Pull Request - State: closed - Opened by gustavdelius over 10 years ago - 2 comments

#5 - What is the meaning of the activity parameter?

Issue - State: closed - Opened by gustavdelius almost 11 years ago - 2 comments

#4 - Show missing plots in vignette

Pull Request - State: closed - Opened by gustavdelius about 11 years ago - 1 comment

#3 - Explanation of cascades

Issue - State: open - Opened by gustavdelius about 11 years ago
Labels: question

#2 - Mizer does not work on all machines.

Pull Request - State: closed - Opened by gustavdelius about 11 years ago - 2 comments

#1 - Fixing some typos in the vignette

Pull Request - State: closed - Opened by gustavdelius about 11 years ago - 5 comments