sizespectrum/mizer issues and pull requests

#204 - `animateSpectra()` should use same line colours as other plots

Issue - State: open - Opened by gustavdelius over 3 years ago - 1 comment
Labels: bug, plots, help wanted

#203 - Legends in plots show only included species

Pull Request - State: closed - Opened by gustavdelius over 3 years ago - 1 comment

#202 - Species names should always be strings

Issue - State: closed - Opened by gustavdelius over 3 years ago
Labels: enhancement, minor effort

#201 - `plotGrowthCurves()` should preserve order of species

Issue - State: closed - Opened by gustavdelius over 3 years ago - 3 comments
Labels: bug, plots, minor effort

#200 - `getYield()` should work also when given a MizerParams object

Issue - State: closed - Opened by gustavdelius over 3 years ago - 1 comment
Labels: enhancement, minor effort

#199 - System for informing users about defaults

Issue - State: closed - Opened by gustavdelius over 3 years ago
Labels: enhancement, setting parameters

#198 - Should default values be stored in species_params?

Issue - State: open - Opened by gustavdelius over 3 years ago - 6 comments
Labels: setting parameters, discussion

#197 - Legend in plots should show only those components that are included in plot

Issue - State: closed - Opened by gustavdelius over 3 years ago
Labels: enhancement, plots, minor effort

#196 - Make `plotDiet()` more similar to other plotting functions

Issue - State: open - Opened by gustavdelius over 3 years ago
Labels: enhancement, plots

#195 - `initialN()` should also work on MizerSim object

Issue - State: closed - Opened by gustavdelius over 3 years ago
Labels: enhancement, minor effort

#194 - New way to visually compare two plots

Issue - State: open - Opened by gustavdelius over 3 years ago - 1 comment
Labels: enhancement, plots

#193 - Update start of multispecies model vignette

Issue - State: closed - Opened by gustavdelius over 3 years ago - 1 comment
Labels: documentation

#191 - return_data argument

Pull Request - State: closed - Opened by baldrech almost 4 years ago - 1 comment

#190 - Proposal: a unified treatment of the extrinsic density dependencies

Issue - State: open - Opened by gustavdelius almost 4 years ago
Labels: enhancement, setting parameters, discussion

#189 - Write a vignette explaining the calculation of the default parameter values

Issue - State: open - Opened by gustavdelius almost 4 years ago
Labels: enhancement, setting parameters, documentation

#188 - Implement `gamma` argument in `newTraitParams()`

Issue - State: closed - Opened by gustavdelius almost 4 years ago
Labels: bug

#187 - Return data argument

Pull Request - State: closed - Opened by baldrech almost 4 years ago - 4 comments

#186 - `version` argument for functions that choose defaults

Issue - State: closed - Opened by gustavdelius almost 4 years ago - 2 comments
Labels: enhancement, setting parameters, discussion, minor effort

#185 - Change default for resource parameters

Issue - State: closed - Opened by gustavdelius almost 4 years ago - 4 comments
Labels: enhancement, setting parameters, discussion

#184 - newMultispeciesParams

Issue - State: closed - Opened by yuxinch almost 4 years ago - 2 comments
Labels: question

#183 - Reduce discretisation effects in calculation of growth curves

Issue - State: closed - Opened by gustavdelius almost 4 years ago - 4 comments
Labels: enhancement

#182 - PlotGrowthCurves() Panel edition

Pull Request - State: closed - Opened by baldrech almost 4 years ago

#181 - 'getFMort()' is not passing time argument correctly

Issue - State: closed - Opened by gustavdelius almost 4 years ago
Labels: bug

#180 - Adding panel plots to plotGrowthCurves()

Pull Request - State: closed - Opened by baldrech almost 4 years ago - 3 comments

#179 - adding the all.sizes arg to plotPredMort and plotFMort

Pull Request - State: closed - Opened by baldrech almost 4 years ago - 3 comments

#178 - Rounding 'w_inf' to fit grid points changes 'eta'

Issue - State: open - Opened by baldrech almost 4 years ago - 2 comments
Labels: enhancement, setting parameters

#177 - Set comments on modified MizerParams slots

Issue - State: closed - Opened by gustavdelius almost 4 years ago

#176 - Cheatsheet for analysis and plotting functions

Issue - State: open - Opened by gustavdelius almost 4 years ago
Labels: enhancement, plots, documentation, major effort, help wanted

#175 - Document 'plotDiet()'

Issue - State: closed - Opened by gustavdelius almost 4 years ago
Labels: plots, documentation

#174 - the calibration sequence for Rmax and kappa

Issue - State: closed - Opened by QinqinLin about 4 years ago - 2 comments
Labels: question

#173 - getYield() error when using effort as an array

Issue - State: closed - Opened by jpwrobinson about 4 years ago - 2 comments
Labels: bug

#172 - Selectivity and catchability by defining their values directly

Issue - State: closed - Opened by michaelspence about 4 years ago - 3 comments

#171 - Save user-defined functions along with MizerParams object

Issue - State: closed - Opened by gustavdelius over 4 years ago - 3 comments
Labels: enhancement, minor effort

#170 - Consistent treatment of `species` arguments

Issue - State: closed - Opened by gustavdelius over 4 years ago
Labels: minor effort, code improvement

#169 - Rate functions should be more consistent in their arguments

Issue - State: open - Opened by gustavdelius over 4 years ago - 1 comment
Labels: enhancement, minor effort, code improvement

#168 - Rate functions should set the dimnames

Issue - State: closed - Opened by gustavdelius over 4 years ago
Labels: enhancement, minor effort, code improvement

#167 - `setRateFunction()` should test the registered function

Issue - State: open - Opened by gustavdelius over 4 years ago
Labels: enhancement, minor effort, code improvement

#166 - Rename README.md to README.sayani

Pull Request - State: closed - Opened by sdm1828 over 4 years ago - 2 comments

#165 - Integration with FLR project?

Issue - State: open - Opened by gustavdelius over 4 years ago - 4 comments
Labels: discussion

#164 - Pass name of component to component dynamics function

Issue - State: closed - Opened by gustavdelius over 4 years ago - 11 comments
Labels: enhancement, minor effort

#163 - Upgrade old params objects automatically

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: enhancement, minor effort

#162 - Better legend in `plotFeedingLevel()` when `include_critical = TRUE`

Issue - State: open - Opened by gustavdelius almost 5 years ago - 2 comments
Labels: enhancement, plots

#161 - `setInitialValues()` fails when used in a model with a single species

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: bug

#160 - `validSpeciesParams()` tries to check validity of `w_mat25` even if it is not specified

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: bug

#159 - `summary()` currently only works with lognormal feeding kernel

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: bug

#157 - In `setInitialValues()` set also `initial_effort`

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: enhancement, minor effort

#156 - Strange naming choices

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 2 comments

#155 - `resource_params<-` is broken

Issue - State: closed - Opened by gustavdelius almost 5 years ago
Labels: bug, fixed

#154 - Test backwards compatibility

Issue - State: closed - Opened by gustavdelius almost 5 years ago

#153 - Remove `sex_ratio` arguments

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 1 comment
Labels: core, minor effort

#150 - Include critical feeding level in plotFeedingLevel()

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#149 - Remove `animateSpectra()`

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#148 - Move immature features out of core mizer into an extension package

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 1 comment

#147 - Show critical feeding level in plotFeedingLevel()

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 1 comment
Labels: plots, minor effort

#146 - Take starvation mortality out of core again to put it into an extension package

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#145 - Accessor functions for slots in MizerParams and MizerSim objects

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 3 comments

#144 - Add "comment" arguments to setter functions

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 1 comment
Labels: enhancement, setting parameters, minor effort

#143 - Stop referring to relationship between reproduction and eggs as stock-recruitment relationship

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 13 comments
Labels: discussion, documentation, minor effort

#142 - Make allometric exponents species-specific

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#141 - Remove unstructured resources and create extension mechanism for other components

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#140 - Integrate multi-fleet in Mizer (cami's multi-fleet branch)

Pull Request - State: closed - Opened by camillanovaglio almost 5 years ago - 2 comments
Labels: enhancement, setting parameters

#139 - Update vignettes and add examples for starvation mortality

Issue - State: closed - Opened by gustavdelius almost 5 years ago - 1 comment

#138 - l25 should be allowed to be up to 25% of l50, not just 10% as was the…

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#137 - Protect commented slots

Pull Request - State: closed - Opened by gustavdelius almost 5 years ago

#136 - Improve error message when user has mistakes in species parameters

Issue - State: closed - Opened by gustavdelius about 5 years ago - 3 comments
Labels: enhancement, setting parameters, help wanted