Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / sizespectrum/mizer issues and pull requests
#195 - `initialN()` should also work on MizerSim object
Issue -
State: closed - Opened by gustavdelius over 3 years ago
Labels: enhancement, minor effort
#194 - New way to visually compare two plots
Issue -
State: open - Opened by gustavdelius over 3 years ago
- 1 comment
Labels: enhancement, plots
#193 - Update start of multispecies model vignette
Issue -
State: closed - Opened by gustavdelius over 3 years ago
- 1 comment
Labels: documentation
#191 - return_data argument
Pull Request -
State: closed - Opened by baldrech over 3 years ago
- 1 comment
#190 - Proposal: a unified treatment of the extrinsic density dependencies
Issue -
State: open - Opened by gustavdelius over 3 years ago
Labels: enhancement, setting parameters, discussion
#189 - Write a vignette explaining the calculation of the default parameter values
Issue -
State: open - Opened by gustavdelius over 3 years ago
Labels: enhancement, setting parameters, documentation
#188 - Implement `gamma` argument in `newTraitParams()`
Issue -
State: closed - Opened by gustavdelius over 3 years ago
Labels: bug
#187 - Return data argument
Pull Request -
State: closed - Opened by baldrech over 3 years ago
- 4 comments
#186 - `version` argument for functions that choose defaults
Issue -
State: closed - Opened by gustavdelius over 3 years ago
- 2 comments
Labels: enhancement, setting parameters, discussion, minor effort
#185 - Change default for resource parameters
Issue -
State: closed - Opened by gustavdelius over 3 years ago
- 4 comments
Labels: enhancement, setting parameters, discussion
#184 - newMultispeciesParams
Issue -
State: closed - Opened by yuxinch over 3 years ago
- 2 comments
Labels: question
#183 - Reduce discretisation effects in calculation of growth curves
Issue -
State: closed - Opened by gustavdelius over 3 years ago
- 4 comments
Labels: enhancement
#182 - PlotGrowthCurves() Panel edition
Pull Request -
State: closed - Opened by baldrech over 3 years ago
#181 - 'getFMort()' is not passing time argument correctly
Issue -
State: closed - Opened by gustavdelius over 3 years ago
Labels: bug
#180 - Adding panel plots to plotGrowthCurves()
Pull Request -
State: closed - Opened by baldrech over 3 years ago
- 3 comments
#179 - adding the all.sizes arg to plotPredMort and plotFMort
Pull Request -
State: closed - Opened by baldrech over 3 years ago
- 3 comments
#178 - Rounding 'w_inf' to fit grid points changes 'eta'
Issue -
State: open - Opened by baldrech over 3 years ago
- 2 comments
Labels: enhancement, setting parameters
#177 - Set comments on modified MizerParams slots
Issue -
State: closed - Opened by gustavdelius over 3 years ago
#176 - Cheatsheet for analysis and plotting functions
Issue -
State: open - Opened by gustavdelius over 3 years ago
Labels: enhancement, plots, documentation, major effort, help wanted
#175 - Document 'plotDiet()'
Issue -
State: closed - Opened by gustavdelius over 3 years ago
Labels: plots, documentation
#174 - the calibration sequence for Rmax and kappa
Issue -
State: closed - Opened by QinqinLin over 3 years ago
- 2 comments
Labels: question
#173 - getYield() error when using effort as an array
Issue -
State: closed - Opened by jpwrobinson almost 4 years ago
- 2 comments
Labels: bug
#172 - Selectivity and catchability by defining their values directly
Issue -
State: closed - Opened by michaelspence almost 4 years ago
- 3 comments
#171 - Save user-defined functions along with MizerParams object
Issue -
State: closed - Opened by gustavdelius about 4 years ago
- 3 comments
Labels: enhancement, minor effort
#170 - Consistent treatment of `species` arguments
Issue -
State: closed - Opened by gustavdelius about 4 years ago
Labels: minor effort, code improvement
#169 - Rate functions should be more consistent in their arguments
Issue -
State: open - Opened by gustavdelius about 4 years ago
- 1 comment
Labels: enhancement, minor effort, code improvement
#168 - Rate functions should set the dimnames
Issue -
State: closed - Opened by gustavdelius about 4 years ago
Labels: enhancement, minor effort, code improvement
#167 - `setRateFunction()` should test the registered function
Issue -
State: open - Opened by gustavdelius about 4 years ago
Labels: enhancement, minor effort, code improvement
#166 - Rename README.md to README.sayani
Pull Request -
State: closed - Opened by sdm1828 over 4 years ago
- 2 comments
#165 - Integration with FLR project?
Issue -
State: open - Opened by gustavdelius over 4 years ago
- 4 comments
Labels: discussion
#164 - Pass name of component to component dynamics function
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 11 comments
Labels: enhancement, minor effort
#163 - Upgrade old params objects automatically
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: enhancement, minor effort
#162 - Better legend in `plotFeedingLevel()` when `include_critical = TRUE`
Issue -
State: open - Opened by gustavdelius over 4 years ago
- 2 comments
Labels: enhancement, plots
#161 - `setInitialValues()` fails when used in a model with a single species
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: bug
#160 - `validSpeciesParams()` tries to check validity of `w_mat25` even if it is not specified
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: bug
#159 - `summary()` currently only works with lognormal feeding kernel
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: bug
#157 - In `setInitialValues()` set also `initial_effort`
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: enhancement, minor effort
#156 - Strange naming choices
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 2 comments
#155 - `resource_params<-` is broken
Issue -
State: closed - Opened by gustavdelius over 4 years ago
Labels: bug, fixed
#154 - Test backwards compatibility
Issue -
State: closed - Opened by gustavdelius over 4 years ago
#153 - Remove `sex_ratio` arguments
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 1 comment
Labels: core, minor effort
#150 - Include critical feeding level in plotFeedingLevel()
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#149 - Remove `animateSpectra()`
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#148 - Move immature features out of core mizer into an extension package
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 1 comment
#147 - Show critical feeding level in plotFeedingLevel()
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 1 comment
Labels: plots, minor effort
#146 - Take starvation mortality out of core again to put it into an extension package
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#145 - Accessor functions for slots in MizerParams and MizerSim objects
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 3 comments
#144 - Add "comment" arguments to setter functions
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 1 comment
Labels: enhancement, setting parameters, minor effort
#143 - Stop referring to relationship between reproduction and eggs as stock-recruitment relationship
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 13 comments
Labels: discussion, documentation, minor effort
#142 - Make allometric exponents species-specific
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#141 - Remove unstructured resources and create extension mechanism for other components
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#140 - Integrate multi-fleet in Mizer (cami's multi-fleet branch)
Pull Request -
State: closed - Opened by camillanovaglio over 4 years ago
- 2 comments
Labels: enhancement, setting parameters
#139 - Update vignettes and add examples for starvation mortality
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 1 comment
#138 - l25 should be allowed to be up to 25% of l50, not just 10% as was the…
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#137 - Protect commented slots
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#136 - Improve error message when user has mistakes in species parameters
Issue -
State: closed - Opened by gustavdelius over 4 years ago
- 3 comments
Labels: enhancement, setting parameters, help wanted
#135 - New function animateSpectra() and some fixes
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#134 - New wrapper function newSheldonParams()
Pull Request -
State: closed - Opened by gustavdelius over 4 years ago
#133 - The carrying capacity of resource spectrum
Issue -
State: closed - Opened by QinqinLin almost 5 years ago
- 5 comments
Labels: question, setting parameters
#132 - Now using the vdiffr package to test plots.
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#131 - Small improvements to documentation and messages. Reexporting melt()
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#130 - Use save version 2 for backwards compatibility with R < 3.5
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#129 - New wrapper functions with new defaults
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#128 - Set good default for gamma for any feeding kernel
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#127 - Minor updates to worksheet for estimating feeding kernels
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#126 - Minor additions to examples and error messages
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#125 - For backwards compatibility, accept also r_max as variable name
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#124 - Use function name in plankton_dynamics slot
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#123 - A "Working with git" section in the developer vignette
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#122 - Empty pull request
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#121 - Pass time
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#120 - Several bug fixes
Pull Request -
State: closed - Opened by gustavdelius almost 5 years ago
#119 - Animate plots with plotly
Issue -
State: closed - Opened by gustavdelius almost 5 years ago
- 1 comment
Labels: enhancement, plots, minor effort, extension
#118 - Adding starvation mortality
Pull Request -
State: closed - Opened by astaaudzi almost 5 years ago
- 4 comments
#117 - Summary of MizerParams returns number of non-empty plankton bins
Pull Request -
State: closed - Opened by patricksykes almost 5 years ago
#116 - summary() for MizerParams objects returns length of w_full as number of plankton bins
Issue -
State: closed - Opened by patricksykes almost 5 years ago
- 1 comment
#115 - Small typo fixes in documentation
Pull Request -
State: closed - Opened by patricksykes almost 5 years ago
#114 - Fixing a couple of small typos in the tutorial vignettes.
Pull Request -
State: closed - Opened by patricksykes almost 5 years ago
- 1 comment
#113 - Adding some diagnostics to steady()
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#112 - tuneParams() now handles plankton growth rate correctly
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#111 - Change how plankton dynamics is set
Issue -
State: closed - Opened by gustavdelius about 5 years ago
Labels: bug, core, minor effort
#110 - Improved default for metabolic rate
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#109 - How to keep backwards compatibility for wrapper functions
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 5 comments
Labels: setting parameters
#108 - Default value for exponent in allocation to reproduction
Issue -
State: open - Opened by gustavdelius about 5 years ago
- 1 comment
Labels: enhancement, setting parameters, discussion, minor effort
#107 - tuneParams() now correctly takes the plankton growth rate
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#106 - Correct some checks for positivity to check for non-negativity.
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
Labels: bug, core, minor effort
#105 - How to combine plots for different simulations
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 7 comments
Labels: enhancement, discussion, plots, extension
#104 - Improve consistency between code documentation and vignettes
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 2 comments
Labels: website, documentation, help wanted
#103 - Which vignettes to include in package and how
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 2 comments
Labels: discussion, documentation
#102 - Saving initial effort in MizerParams object
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#101 - Improve default for metabolic rate
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 9 comments
Labels: enhancement, question, setting parameters
#100 - Changed slot `srr` to hold the name of the stock recruitment function…
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#99 - Take unstructured resources out of mizer
Issue -
State: closed - Opened by gustavdelius about 5 years ago
Labels: core
#97 - Saving initial effort in MizerParams object
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
- 1 comment
#96 - Rename r max
Pull Request -
State: closed - Opened by gustavdelius about 5 years ago
#95 - Make plots faster by including fewer points
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 1 comment
Labels: enhancement, plots, help wanted
#94 - Improve and document handling of linecolour and linetype
Issue -
State: open - Opened by gustavdelius about 5 years ago
- 1 comment
Labels: enhancement, plots, help wanted
#93 - Set good default for gamma for any predation kernel
Issue -
State: closed - Opened by gustavdelius about 5 years ago
Labels: enhancement, setting parameters, minor effort
#92 - Make allometric exponents species-specific
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 2 comments
Labels: enhancement, setting parameters, discussion, minor effort
#91 - Problem with srr slot when sharing saved params objects
Issue -
State: closed - Opened by gustavdelius about 5 years ago
- 2 comments
Labels: bug, discussion, core