Ecosyste.ms: Issues

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GitHub / sintef/pyopia issues and pull requests

#48 - establish some high-level tests

Issue - State: closed - Opened by emlynjdavies about 2 years ago - 2 comments
Labels: patch / enhancement

#47 - enable use of export_particles input parameters

Pull Request - State: closed - Opened by emlynjdavies about 2 years ago - 1 comment

#47 - enable use of export_particles input parameters

Pull Request - State: closed - Opened by emlynjdavies about 2 years ago - 1 comment

#46 - export_outputpath is too buried and not accessable on pipeline level

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: bug, priority-high

#46 - export_outputpath is too buried and not accessable on pipeline level

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: bug, priority-high

#45 - swap out settings inputs to more explicit args

Pull Request - State: closed - Opened by emlynjdavies about 2 years ago

#45 - swap out settings inputs to more explicit args

Pull Request - State: closed - Opened by emlynjdavies about 2 years ago

#44 - statistics.make_timeseries_vd still contains old pysilcam settings dict

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: bug, priority-high

#44 - statistics.make_timeseries_vd still contains old pysilcam settings dict

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: bug, priority-high

#43 - add arg string for filename in pipeline run

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: documentation, priority-medium

#43 - add arg string for filename in pipeline run

Issue - State: closed - Opened by emlynjdavies about 2 years ago
Labels: documentation, priority-medium

#42 - Process several files

Pull Request - State: closed - Opened by emlynjdavies about 2 years ago
Labels: patch / enhancement

#41 - Bump tensorflow-cpu from 2.10.0 to 2.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#41 - Bump tensorflow-cpu from 2.10.0 to 2.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#40 - condaenv.rqg_58ui.requirements.txt

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: priority-low

#40 - condaenv.rqg_58ui.requirements.txt

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: priority-low

#39 - Better docs for classification module

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago
Labels: documentation

#38 - pipeline datatypes

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago

#37 - error in exampledata.get_example_model() on first time run

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: bug, priority-high

#37 - error in exampledata.get_example_model() on first time run

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: bug, priority-high

#36 - running the pipeline.ipynb gets an error that the "proc" folder doesn't exist

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: bug, priority-low

#36 - running the pipeline.ipynb gets an error that the "proc" folder doesn't exist

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: bug, priority-low

#35 - add auto-download of holograms to exampledata.py

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: documentation, patch / enhancement

#34 - put example hologram data on public server

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: patch / enhancement

#33 - Pipeline doc typo

Issue - State: closed - Opened by emlynjdavies over 2 years ago

#32 - Split statextract

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: patch / enhancement

#32 - Split statextract

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: patch / enhancement

#31 - Dynamic pipeline

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 3 comments
Labels: question

#31 - Dynamic pipeline

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 3 comments
Labels: question

#30 - Consider more flexible Pipeline that is not dependent on step name

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: patch / enhancement, question

#30 - Consider more flexible Pipeline that is not dependent on step name

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: patch / enhancement, question

#29 - address comments from first holo PR

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago

#26 - Jupyter notebook and matplotlib should be added to the environment file

Issue - State: closed - Opened by nordam over 2 years ago - 3 comments
Labels: dependencies, priority-medium

#25 - There are two methods (predict, proc_predict) with the same explanation in the doc string

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: documentation

#25 - There are two methods (predict, proc_predict) with the same explanation in the doc string

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: documentation

#24 - Establish basic set of tests for analysis functions

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: duplicate, patch / enhancement

#24 - Establish basic set of tests for analysis functions

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: duplicate, patch / enhancement

#23 - investigate Xarray for the holographic kernel creation and imagestack

Issue - State: open - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: minor new feature

#23 - investigate Xarray for the holographic kernel creation and imagestack

Issue - State: open - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: minor new feature

#22 - separate segmentation from statextract

Issue - State: closed - Opened by emlynjdavies over 2 years ago

#21 - Holo

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 5 comments
Labels: patch / enhancement

#20 - 18 metadata documenting processing steps

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment

#19 - upgrade tensorflow version

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: bug

#18 - metadata documenting processing steps

Issue - State: closed - Opened by emlynjdavies over 2 years ago
Labels: patch / enhancement

#17 - tensorflow version incompatability with numpy

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 2 comments
Labels: bug

#16 - 15 sphinx has stopped auto building documentation so readthedocs is empty

Pull Request - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment
Labels: documentation

#15 - sphinx has stopped auto-building documentation, so readthedocs is empty.

Issue - State: closed - Opened by emlynjdavies over 2 years ago - 1 comment

#12 - update settings inputs in lower-level functions, so that can be passed into process_image

Issue - State: closed - Opened by emlynjdavies almost 3 years ago - 1 comment
Labels: patch / enhancement

#11 - add rtd link to readme

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: documentation

#10 - add notebook example of single image processing

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago - 9 comments
Labels: documentation

#9 - Current status in README

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: documentation

#8 - add a modified version of process.py from pysilcam

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago - 1 comment
Labels: patch / enhancement

#7 - incorporate pysilcam's classification functions

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: patch / enhancement

#6 - classification functions

Issue - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: patch / enhancement

#5 - processing functions

Issue - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: patch / enhancement

#4 - 3 setup rtd

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago - 3 comments
Labels: documentation

#3 - setup RTD

Issue - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: documentation

#2 - Simple code

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago
Labels: patch / enhancement

#1 - background infrastructure for the repo

Pull Request - State: closed - Opened by emlynjdavies almost 3 years ago - 3 comments