singularityhub/singularity-python issues and pull requests

#102 - ENV directive ignored when converting Dockerfile to Singularity def.

Issue - State: closed - Opened by d3v-null over 1 year ago - 2 comments

#101 - Using the sed command in Singularity Exec does not work. Similar with Redirect ">" symbol.

Issue - State: open - Opened by jjacobson95 almost 3 years ago - 6 comments

#100 - Fix broke image link for container tree

Pull Request - State: open - Opened by vladdoster over 5 years ago

#99 - tweaking main to correctly save image

Pull Request - State: closed - Opened by vsoch over 5 years ago

#98 - Update reproducibility metrics for 3.* containers

Pull Request - State: closed - Opened by vsoch over 6 years ago

#97 - add Google cloud build

Issue - State: closed - Opened by vsoch over 6 years ago - 1 comment

#96 - Support more options for singularity run and singularity exec (--pwd)

Issue - State: open - Opened by namheegordonkim about 7 years ago - 2 comments

#95 - singularity hub builder for 2.6

Issue - State: open - Opened by vsoch over 7 years ago

#94 - add isolated-root option

Issue - State: closed - Opened by vsoch over 7 years ago - 1 comment

#93 - recipe file should be given temporary extension

Issue - State: open - Opened by vsoch almost 8 years ago

#92 - Updates for 2.5 (with merge conflicts resolved)

Pull Request - State: closed - Opened by vsoch almost 8 years ago - 1 comment

#91 - Revision of Singularity Python for V2.5

Pull Request - State: closed - Opened by vsoch almost 8 years ago - 1 comment

#90 - added bind paths args

Pull Request - State: closed - Opened by biosugar0 almost 8 years ago - 2 comments

#89 - remove builder, etc. functions, streamline client

Issue - State: closed - Opened by vsoch about 8 years ago - 1 comment

#88 - remove sregistry client from here

Issue - State: closed - Opened by vsoch about 8 years ago - 1 comment

#87 - Update PyPi package to be in sync with version used by sregistry (or later?)

Issue - State: closed - Opened by dtrudg about 8 years ago - 6 comments

#86 - Singularity-python container not working

Issue - State: closed - Opened by victorsndvg about 8 years ago - 6 comments

#85 - Development

Pull Request - State: closed - Opened by vsoch about 8 years ago

#84 - remove misleading error message

Issue - State: closed - Opened by vsoch about 8 years ago

#83 - Update pyasn1 in Singularity recipe

Issue - State: closed - Opened by victorsndvg about 8 years ago - 5 comments

#82 - V2.4.1

Pull Request - State: closed - Opened by vsoch about 8 years ago

#81 - [version 2.0] Make clients separate API modules

Issue - State: closed - Opened by mconcas over 8 years ago - 10 comments

#80 - Development

Pull Request - State: closed - Opened by vsoch over 8 years ago

#79 - support to create symlink in repos linked to singularityhub?

Issue - State: closed - Opened by pescobar over 8 years ago - 1 comment

#78 - updating README

Pull Request - State: closed - Opened by vsoch over 8 years ago

#77 - adding Singularity file

Pull Request - State: closed - Opened by vsoch over 8 years ago

#76 - Migration to Singularity Hub 2.0 is done

Pull Request - State: closed - Opened by vsoch over 8 years ago

#75 - container bases for docker should be updated

Issue - State: closed - Opened by vsoch over 8 years ago - 1 comment

#74 - squashfs must still be compressed (again)

Issue - State: closed - Opened by vsoch over 8 years ago

#73 - add function for parsing a singularity registry (base) recipes folder

Issue - State: closed - Opened by vsoch over 8 years ago - 1 comment

#72 - call to get containers from collection update

Issue - State: closed - Opened by vsoch over 8 years ago

#71 - add security checks

Issue - State: closed - Opened by vsoch over 8 years ago - 1 comment

#70 - reproduce/utils.py tweaks

Issue - State: closed - Opened by vsoch over 8 years ago - 1 comment

#69 - updating main build to not use in memory tar, not suitable for singul…

Pull Request - State: closed - Opened by vsoch over 8 years ago

#68 - Development update for singularity 2.3

Pull Request - State: closed - Opened by vsoch over 8 years ago

#67 - add inspect to client

Issue - State: closed - Opened by vsoch over 8 years ago

#66 - add functions for proper compression and decompression of images

Issue - State: closed - Opened by vsoch almost 9 years ago - 1 comment

#65 - run_client.py fails - with apparent permission issue - to pull image into folder even with 777 permissions

Issue - State: closed - Opened by alaindomissy almost 9 years ago - 3 comments

#64 - run_client.py faild to pull an image, with "Do you have permission to write to ..." error message

Issue - State: closed - Opened by alaindomissy almost 9 years ago - 3 comments

#63 - Development

Pull Request - State: closed - Opened by vsoch almost 9 years ago

#62 - try using multiprocessing for reproducibility functions

Issue - State: open - Opened by vsoch almost 9 years ago

#61 - Updating Singularity Python (mostly) for 2.3

Pull Request - State: closed - Opened by vsoch almost 9 years ago

#60 - converter needs to be updated (and tests written) for 2.3 support

Issue - State: closed - Opened by vsoch almost 9 years ago

#59 - make cleaner docs, hosted in docs folder from master

Issue - State: closed - Opened by vsoch almost 9 years ago

#58 - update for 2.3 support

Issue - State: closed - Opened by vsoch almost 9 years ago

#57 - Add/client

Pull Request - State: closed - Opened by vsoch almost 9 years ago

#56 - [reproducibility] add assessment functions!

Issue - State: closed - Opened by vsoch almost 9 years ago - 1 comment

#55 - fixing bug with client

Pull Request - State: closed - Opened by vsoch almost 9 years ago

#54 - Add/client

Pull Request - State: closed - Opened by vsoch almost 9 years ago

#53 - add client endpoints for getting labels, environment, and arguments

Issue - State: closed - Opened by vsoch almost 9 years ago - 1 comment

#52 - [client] add client just for singularity hub (not through singularity)

Issue - State: closed - Opened by vsoch almost 9 years ago

#51 - adding interactive tree for singularity hub

Pull Request - State: closed - Opened by vsoch about 9 years ago

#50 - need to carefully debug dockerfile conversion

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#49 - adding function to generate Singularity build spec from Dockerfile, and build private repos

Pull Request - State: closed - Opened by vsoch about 9 years ago

#48 - updating to include retrying in google functions with exponential backoff

Pull Request - State: closed - Opened by vsoch about 9 years ago

#47 - adding visualization function for os sims

Pull Request - State: closed - Opened by vsoch about 9 years ago

#46 - add function for visualization of os sims

Issue - State: closed - Opened by vsoch about 9 years ago

#45 - Updates to singularity python to support advanced shub functions

Pull Request - State: closed - Opened by vsoch about 9 years ago - 1 comment

#44 - generate metric for readmes

Issue - State: closed - Opened by vsoch about 9 years ago - 2 comments

#43 - add functions to derive tags, estimate os, and scores

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#42 - bug in similarity calculation

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment
Labels: bug

#41 - need sleep

Pull Request - State: closed - Opened by vsoch about 9 years ago

#40 - tweaks for builder

Pull Request - State: closed - Opened by vsoch about 9 years ago

#39 - modify build parameters and calculate size dynamically

Pull Request - State: closed - Opened by vsoch about 9 years ago

#38 - builder scripts served with application not being added

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#37 - finish writing tests for all modules

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#36 - adding build specs to singularity python to close #35

Pull Request - State: closed - Opened by vsoch about 9 years ago

#35 - singularity python should be source of build templates

Issue - State: closed - Opened by vsoch about 9 years ago

#34 - update singularity commands (without docker) to not require sudo

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#33 - update continuous integration tests, do for python 2 and 3

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#32 - add proper logging to all modules

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#31 - singularity hub visualization functions, etc. should be shared here

Issue - State: closed - Opened by vsoch about 9 years ago - 2 comments

#30 - Question: Roadmap for development

Issue - State: closed - Opened by seandavi about 9 years ago - 11 comments

#29 - shub importing non-existent stuff

Issue - State: closed - Opened by seandavi about 9 years ago - 2 comments

#28 - old tests need to be updated

Issue - State: closed - Opened by vsoch about 9 years ago - 1 comment

#27 - update testing to use Singularity spec file (not .def)

Issue - State: closed - Opened by vsoch over 9 years ago - 1 comment

#26 - add logging functionality to builders

Issue - State: closed - Opened by vsoch over 9 years ago

#25 - remove docker2singularity functionality

Issue - State: closed - Opened by vsoch over 9 years ago

#24 - prepend with "export" for non bash compatibility

Pull Request - State: closed - Opened by chrisgorgo over 9 years ago - 5 comments

#23 - add tests to produce (tree) visualizations

Issue - State: closed - Opened by vsoch over 9 years ago

#22 - Update/docker

Pull Request - State: closed - Opened by vsoch over 9 years ago

#21 - make docker it's own module

Issue - State: closed - Opened by vsoch over 9 years ago

#20 - adding test for views

Pull Request - State: closed - Opened by vsoch over 9 years ago - 1 comment

#19 - bug: LargeZipFile: Filesize would require ZIP64 extensions

Issue - State: closed - Opened by vsoch over 9 years ago

#18 - bug: package image exports string of image path, not image!

Issue - State: closed - Opened by vsoch over 9 years ago
Labels: bug

#17 - write equivalent views/functions for comparing images/packages

Issue - State: closed - Opened by vsoch over 9 years ago - 1 comment

#16 - Try converting Dockerfiles to singularity specs

Issue - State: closed - Opened by vsoch over 9 years ago - 1 comment

#15 - need proper flask server

Issue - State: closed - Opened by vsoch over 9 years ago - 1 comment

#14 - update command line client to match docker2singularity.sh

Issue - State: closed - Opened by vsoch over 9 years ago

#13 - docker2singularity improvements

Pull Request - State: closed - Opened by chrisgorgo over 9 years ago - 41 comments

GitHub / singularityhub/singularity-python issues and pull requests