Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / singleron-RD/CeleScope issues and pull requests

#291 - numpy.dtype size changed

Issue - State: open - Opened by biobirds9 3 months ago - 4 comments

#290 - Bump scikit-learn from 1.2.2 to 1.5.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#289 - FileNotFoundError: Did not find file SMA/outs/filtered/matrix.mtx.gz.

Issue - State: open - Opened by 2124sa 4 months ago - 1 comment

#288 - Multiple errors trying to analyze flv_trust4 data

Issue - State: open - Opened by panapapa14 4 months ago - 5 comments

#287 - featureCounts subprocess.CalledProcessError

Issue - State: open - Opened by CaiCheng1996 4 months ago - 1 comment

#286 - update --STAR_param parsing method

Pull Request - State: closed - Opened by pigraul 5 months ago

#285 - IndexError: sequence length is not enough in R1 read

Issue - State: open - Opened by calcaidecabello 5 months ago - 7 comments

#284 - Problem with mkref

Issue - State: closed - Opened by calcaidecabello 5 months ago

#281 - 1.12.0 can be installed, but failed to be run.

Issue - State: closed - Opened by CaiCheng1996 6 months ago - 3 comments

#280 - celescope rna mkref but no folder output

Issue - State: closed - Opened by CaiCheng1996 6 months ago - 2 comments

#279 - Individual steps are not working.

Issue - State: closed - Opened by araboapresyan 6 months ago - 4 comments

#278 - Celescope needs an improved documentation/manual

Issue - State: open - Opened by wendelljpereira 7 months ago - 3 comments
Labels: enhancement

#277 - Auto Chemistry Detection Failing and FIFO File Generation Problem

Issue - State: open - Opened by Sandman-1 7 months ago - 7 comments

#276 - BGI data was not suitable for version 2.0.7

Issue - State: open - Opened by biozhao77 7 months ago - 7 comments

#275 - Problem installing celescope, cannot build wheel for pysam

Issue - State: open - Opened by elquinessyang 7 months ago - 2 comments

#274 - Splitting VDJ fails

Issue - State: closed - Opened by MarcElvld 7 months ago - 3 comments

#273 - Problem in running Celescope for RNA

Issue - State: open - Opened by AndreaGhiroldi 8 months ago - 4 comments

#272 - Problem in mkref command

Issue - State: open - Opened by AndreaGhiroldi 8 months ago - 2 comments

#271 - aggr function

Issue - State: open - Opened by vagabond12 9 months ago - 1 comment

#270 - No bclist found for chemistry scopeV1 under

Issue - State: closed - Opened by guijie2015 11 months ago - 2 comments

#268 - bulk_rna

Pull Request - State: closed - Opened by pigraul 12 months ago

#267 - Dev

Pull Request - State: closed - Opened by pigraul about 1 year ago

#265 - Instlation versions problem

Issue - State: open - Opened by MohamedAbdalfatah about 1 year ago - 3 comments

#264 - Lung panel gene list - KRAS

Issue - State: closed - Opened by WouterMidden about 1 year ago - 1 comment
Labels: bug

#263 - gtf file not found

Issue - State: closed - Opened by zhouyiqi91 about 1 year ago
Labels: bug

#261 - bulk vdj

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#260 - bulk_vdj

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#259 - bulk_vdj

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#258 - add bulk_rna

Pull Request - State: closed - Opened by pigraul about 1 year ago

#257 - dynaseq

Pull Request - State: closed - Opened by pigraul about 1 year ago

#256 - bulk_vdj

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#255 - tag

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#254 - add bulk_vdj assay

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#253 - dynaseq

Pull Request - State: closed - Opened by pigraul about 1 year ago

#252 - update dynaseq assay

Pull Request - State: closed - Opened by pigraul about 1 year ago

#251 - Chemistry Error with "Auto" parameter.

Issue - State: closed - Opened by hkarakurt8742 about 1 year ago - 2 comments

#250 - about a strange error

Issue - State: open - Opened by evenDDDDD about 1 year ago - 3 comments

#249 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 about 1 year ago

#248 - celescope vdj mapping_vdj CalledProcessError error

Issue - State: open - Opened by liujiayu1997 about 1 year ago - 1 comment

#247 - Running mulit_snp on focusscope data leads to error in later stages

Issue - State: closed - Opened by jaspitzer over 1 year ago - 5 comments

#246 - flv

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#245 - snp assay

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#244 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#243 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#242 - New version of celescope, old version of singleron scRNA-seq data

Issue - State: closed - Opened by yemao701 over 1 year ago - 1 comment

#241 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#240 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#239 - dev in bulk vdj branch

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#238 - Dev

Pull Request - State: closed - Opened by wuqi21 over 1 year ago

#237 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#236 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#235 - docker image fails to build

Issue - State: closed - Opened by stfacc over 1 year ago - 2 comments

#234 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#233 - utils

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#232 - json.decoder.JSONDecodeError

Issue - State: closed - Opened by Zluei over 1 year ago - 2 comments

#231 - barcode tool usage

Issue - State: closed - Opened by singlecoated over 1 year ago - 5 comments

#230 - Convert module

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#229 - vdj mkref

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#228 - Dynaseq

Pull Request - State: closed - Opened by pigraul over 1 year ago - 2 comments

#227 - vdj assay

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#226 - flv_CR

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#225 - vdj assay

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#224 - EOF marker is absent. The input may be truncated

Issue - State: closed - Opened by sofiaborgato over 1 year ago - 1 comment

#223 - [W::bgzf_read_block] EOF marker is absent. The input may be truncated.

Issue - State: closed - Opened by univerchen over 1 year ago - 3 comments

#222 - convert10X assay

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago
Labels: documentation

#221 - problems

Issue - State: closed - Opened by 33Dr over 1 year ago - 13 comments

#220 - Dynaseq

Pull Request - State: closed - Opened by pigraul over 1 year ago

#219 - Dev

Pull Request - State: closed - Opened by wuqi21 over 1 year ago

#218 - SNP assay

Pull Request - State: closed - Opened by Chenjunjie1996 over 1 year ago

#217 - fix analysis_snp

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#216 - How to create bam document?

Issue - State: closed - Opened by lihaowhusos almost 2 years ago

#215 - Atac

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#214 - test data run ERROR: genomeParameters.txt not found

Issue - State: closed - Opened by jdekanter almost 2 years ago - 3 comments

#213 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#212 - Bulk vdj

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#211 - flv_CR mapping prompt `rds file and type file do not exist` error

Issue - State: closed - Opened by asdChenJin almost 2 years ago - 4 comments

#210 - update flvdj_cloud

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#209 - add single tsne plot for tag

Pull Request - State: closed - Opened by wuqi21 almost 2 years ago

#207 - bulk_vdj

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#206 - fix igblast install

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#205 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#204 - vdj mkref no longer available?

Issue - State: closed - Opened by m-fayer almost 2 years ago - 4 comments

#203 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#202 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#201 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#200 - cell calling

Issue - State: closed - Opened by univerchen almost 2 years ago - 4 comments

#199 - remove duplicates

Issue - State: closed - Opened by univerchen almost 2 years ago - 1 comment

#198 - Remove `vdj` from manual

Pull Request - State: closed - Opened by zhouyiqi91 almost 2 years ago

#197 - threads for multi_rna

Issue - State: closed - Opened by univerchen almost 2 years ago - 1 comment

#196 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago

#195 - celescope rna [E::idx_find_and_load] Could not retrieve index file for bam files

Issue - State: closed - Opened by univerchen almost 2 years ago - 1 comment

#194 - Where is fusion_genomeDir？

Issue - State: closed - Opened by asdChenJin almost 2 years ago - 4 comments

#193 - Celescope 1.5.0b0

Pull Request - State: closed - Opened by lzh233 almost 2 years ago

#192 - fix filename bug

Pull Request - State: closed - Opened by lzh233 almost 2 years ago

#191 - Virus mtx2

Pull Request - State: closed - Opened by lzh233 almost 2 years ago

#190 - Dev

Pull Request - State: closed - Opened by Chenjunjie1996 almost 2 years ago