Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / singleron-RD/CeleScope issues and pull requests
#291 - numpy.dtype size changed
Issue -
State: open - Opened by biobirds9 3 months ago
- 4 comments
#290 - Bump scikit-learn from 1.2.2 to 1.5.0
Pull Request -
State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python
#289 - FileNotFoundError: Did not find file SMA/outs/filtered/matrix.mtx.gz.
Issue -
State: open - Opened by 2124sa 4 months ago
- 1 comment
#288 - Multiple errors trying to analyze flv_trust4 data
Issue -
State: open - Opened by panapapa14 4 months ago
- 5 comments
#287 - featureCounts subprocess.CalledProcessError
Issue -
State: open - Opened by CaiCheng1996 4 months ago
- 1 comment
#286 - update --STAR_param parsing method
Pull Request -
State: closed - Opened by pigraul 5 months ago
#285 - IndexError: sequence length is not enough in R1 read
Issue -
State: open - Opened by calcaidecabello 5 months ago
- 7 comments
#284 - Problem with mkref
Issue -
State: closed - Opened by calcaidecabello 5 months ago
#281 - 1.12.0 can be installed, but failed to be run.
Issue -
State: closed - Opened by CaiCheng1996 6 months ago
- 3 comments
#280 - celescope rna mkref but no folder output
Issue -
State: closed - Opened by CaiCheng1996 6 months ago
- 2 comments
#279 - Individual steps are not working.
Issue -
State: closed - Opened by araboapresyan 6 months ago
- 4 comments
#278 - Celescope needs an improved documentation/manual
Issue -
State: open - Opened by wendelljpereira 7 months ago
- 3 comments
Labels: enhancement
#277 - Auto Chemistry Detection Failing and FIFO File Generation Problem
Issue -
State: open - Opened by Sandman-1 7 months ago
- 7 comments
#276 - BGI data was not suitable for version 2.0.7
Issue -
State: open - Opened by biozhao77 7 months ago
- 7 comments
#275 - Problem installing celescope, cannot build wheel for pysam
Issue -
State: open - Opened by elquinessyang 7 months ago
- 2 comments
#274 - Splitting VDJ fails
Issue -
State: closed - Opened by MarcElvld 7 months ago
- 3 comments
#273 - Problem in running Celescope for RNA
Issue -
State: open - Opened by AndreaGhiroldi 8 months ago
- 4 comments
#272 - Problem in mkref command
Issue -
State: open - Opened by AndreaGhiroldi 8 months ago
- 2 comments
#271 - aggr function
Issue -
State: open - Opened by vagabond12 9 months ago
- 1 comment
#270 - No bclist found for chemistry scopeV1 under
Issue -
State: closed - Opened by guijie2015 11 months ago
- 2 comments
#269 - Some ISSUEs concerning about constructing REFERENCE on vdj sequencing and full length immune receptor sequencing
Issue -
State: open - Opened by Gethell 11 months ago
- 6 comments
#268 - bulk_rna
Pull Request -
State: closed - Opened by pigraul 12 months ago
#267 - Dev
Pull Request -
State: closed - Opened by pigraul about 1 year ago
#266 - Subread and cutadapt working as Single-end reads BUT I have Paired end reads
Issue -
State: open - Opened by MohamedAbdalfatah about 1 year ago
- 1 comment
#265 - Instlation versions problem
Issue -
State: open - Opened by MohamedAbdalfatah about 1 year ago
- 3 comments
#264 - Lung panel gene list - KRAS
Issue -
State: closed - Opened by WouterMidden about 1 year ago
- 1 comment
Labels: bug
#263 - gtf file not found
Issue -
State: closed - Opened by zhouyiqi91 about 1 year ago
Labels: bug
#262 - snp target_metrics FileNotFoundError(f'No file found for {pattern_list}')
Issue -
State: open - Opened by PhilippBanza about 1 year ago
- 1 comment
#261 - bulk vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#260 - bulk_vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#259 - bulk_vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#258 - add bulk_rna
Pull Request -
State: closed - Opened by pigraul about 1 year ago
#257 - dynaseq
Pull Request -
State: closed - Opened by pigraul about 1 year ago
#256 - bulk_vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#255 - tag
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#254 - add bulk_vdj assay
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#253 - dynaseq
Pull Request -
State: closed - Opened by pigraul about 1 year ago
#252 - update dynaseq assay
Pull Request -
State: closed - Opened by pigraul about 1 year ago
#251 - Chemistry Error with "Auto" parameter.
Issue -
State: closed - Opened by hkarakurt8742 about 1 year ago
- 2 comments
#250 - about a strange error
Issue -
State: open - Opened by evenDDDDD about 1 year ago
- 3 comments
#249 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 about 1 year ago
#248 - celescope vdj mapping_vdj CalledProcessError error
Issue -
State: open - Opened by liujiayu1997 about 1 year ago
- 1 comment
#247 - Running mulit_snp on focusscope data leads to error in later stages
Issue -
State: closed - Opened by jaspitzer over 1 year ago
- 5 comments
#246 - flv
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#245 - snp assay
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#244 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#243 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#242 - New version of celescope, old version of singleron scRNA-seq data
Issue -
State: closed - Opened by yemao701 over 1 year ago
- 1 comment
#241 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#240 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#239 - dev in bulk vdj branch
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#238 - Dev
Pull Request -
State: closed - Opened by wuqi21 over 1 year ago
#237 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#236 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#235 - docker image fails to build
Issue -
State: closed - Opened by stfacc over 1 year ago
- 2 comments
#234 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#233 - utils
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#232 - json.decoder.JSONDecodeError
Issue -
State: closed - Opened by Zluei over 1 year ago
- 2 comments
#231 - barcode tool usage
Issue -
State: closed - Opened by singlecoated over 1 year ago
- 5 comments
#230 - Convert module
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#229 - vdj mkref
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#228 - Dynaseq
Pull Request -
State: closed - Opened by pigraul over 1 year ago
- 2 comments
#227 - vdj assay
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#226 - flv_CR
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#225 - vdj assay
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#224 - EOF marker is absent. The input may be truncated
Issue -
State: closed - Opened by sofiaborgato over 1 year ago
- 1 comment
#223 - [W::bgzf_read_block] EOF marker is absent. The input may be truncated.
Issue -
State: closed - Opened by univerchen over 1 year ago
- 3 comments
#222 - convert10X assay
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
Labels: documentation
#221 - problems
Issue -
State: closed - Opened by 33Dr over 1 year ago
- 13 comments
#220 - Dynaseq
Pull Request -
State: closed - Opened by pigraul over 1 year ago
#219 - Dev
Pull Request -
State: closed - Opened by wuqi21 over 1 year ago
#218 - SNP assay
Pull Request -
State: closed - Opened by Chenjunjie1996 over 1 year ago
#217 - fix analysis_snp
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#216 - How to create bam document?
Issue -
State: closed - Opened by lihaowhusos almost 2 years ago
#215 - Atac
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#214 - test data run ERROR: genomeParameters.txt not found
Issue -
State: closed - Opened by jdekanter almost 2 years ago
- 3 comments
#213 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#212 - Bulk vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#211 - flv_CR mapping prompt `rds file and type file do not exist` error
Issue -
State: closed - Opened by asdChenJin almost 2 years ago
- 4 comments
#210 - update flvdj_cloud
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#209 - add single tsne plot for tag
Pull Request -
State: closed - Opened by wuqi21 almost 2 years ago
#208 - "FileNotFoundError: --match_dir or --matrix_dir is required" when running "celescope vdj count_vdj"
Issue -
State: closed - Opened by m-fayer almost 2 years ago
- 2 comments
#207 - bulk_vdj
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#206 - fix igblast install
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#205 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#204 - vdj mkref no longer available?
Issue -
State: closed - Opened by m-fayer almost 2 years ago
- 4 comments
#203 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#202 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#201 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#200 - cell calling
Issue -
State: closed - Opened by univerchen almost 2 years ago
- 4 comments
#199 - remove duplicates
Issue -
State: closed - Opened by univerchen almost 2 years ago
- 1 comment
#198 - Remove `vdj` from manual
Pull Request -
State: closed - Opened by zhouyiqi91 almost 2 years ago
#197 - threads for multi_rna
Issue -
State: closed - Opened by univerchen almost 2 years ago
- 1 comment
#196 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago
#195 - celescope rna [E::idx_find_and_load] Could not retrieve index file for bam files
Issue -
State: closed - Opened by univerchen almost 2 years ago
- 1 comment
#194 - Where is fusion_genomeDir?
Issue -
State: closed - Opened by asdChenJin almost 2 years ago
- 4 comments
#193 - Celescope 1.5.0b0
Pull Request -
State: closed - Opened by lzh233 almost 2 years ago
#192 - fix filename bug
Pull Request -
State: closed - Opened by lzh233 almost 2 years ago
#191 - Virus mtx2
Pull Request -
State: closed - Opened by lzh233 almost 2 years ago
#190 - Dev
Pull Request -
State: closed - Opened by Chenjunjie1996 almost 2 years ago