simularium/simularium-viewer issues and pull requests

#339 - refresh several dependencies and reconfigure tests to stop using esbuild

Pull Request - State: closed - Opened by toloudis over 1 year ago - 2 comments

#338 - added the template for release

Pull Request - State: open - Opened by meganrm over 1 year ago - 1 comment

#337 - Bump @babel/traverse from 7.21.5 to 7.23.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#336 - Monitor CORS issues with loading geometry from dropbox and drive

Issue - State: open - Opened by blairlyons over 1 year ago
Labels: maintenance

#335 - change dropbox links

Pull Request - State: closed - Opened by meganrm over 1 year ago - 1 comment

#334 - fix type exports

Pull Request - State: closed - Opened by interim17 over 1 year ago - 1 comment

#333 - add translation and rotation to fiber agents

Pull Request - State: closed - Opened by toloudis over 1 year ago - 2 comments

#332 - Fiber subpoint positions should be relative to agent position

Issue - State: closed - Opened by ascibisz over 1 year ago - 3 comments
Labels: maintenance

#331 - Bump postcss from 8.4.23 to 8.4.31

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#330 - Initial camera view zoomed far out

Issue - State: closed - Opened by blairlyons over 1 year ago - 3 comments
Labels: bug

#329 - Dark shading in ortho camera mode

Issue - State: open - Opened by blairlyons over 1 year ago
Labels: bug

#328 - Feature/set agent color edits

Pull Request - State: closed - Opened by meganrm over 1 year ago

#327 - delay webgl init until after component mounted

Pull Request - State: closed - Opened by toloudis over 1 year ago - 5 comments

#326 - right-click drag panning behavior changed

Issue - State: closed - Opened by toloudis over 1 year ago - 1 comment
Labels: bug

#325 - Feature/set agent color

Pull Request - State: closed - Opened by interim17 over 1 year ago - 2 comments

#324 - bind setCameraType and this in controller

Pull Request - State: closed - Opened by interim17 over 1 year ago - 1 comment

#323 - Bump word-wrap from 1.2.3 to 1.2.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#322 - Bump tough-cookie from 4.1.2 to 4.1.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#321 - Catch error that occurs in race condition

Pull Request - State: closed - Opened by ascibisz over 1 year ago - 1 comment

#320 - Fix bug with responding to heartbeat ping

Pull Request - State: closed - Opened by ascibisz over 1 year ago - 3 comments

#319 - Fix `VisGeometry` constructor overwriting properties it initializes

Pull Request - State: closed - Opened by frasercl over 1 year ago - 4 comments

#318 - make all json message handlers into arrow functions

Pull Request - State: closed - Opened by meganrm over 1 year ago - 1 comment

#317 - fix error

Pull Request - State: closed - Opened by meganrm over 1 year ago - 3 comments

#316 - Bug fix: Default to secureConnection = true if it not defined

Pull Request - State: closed - Opened by ascibisz over 1 year ago - 1 comment

#315 - Fix/ao with zoom

Pull Request - State: closed - Opened by toloudis over 1 year ago - 1 comment

#314 - Feature/orthographic camera

Pull Request - State: closed - Opened by frasercl over 1 year ago - 1 comment

#313 - Fix/interface simularium file

Pull Request - State: closed - Opened by meganrm over 1 year ago - 1 comment

#312 - Fix/threejs types

Pull Request - State: closed - Opened by toloudis almost 2 years ago - 4 comments

#311 - transparency: shading improvement

Issue - State: open - Opened by toloudis almost 2 years ago

#310 - transparency: extra depth buffer

Issue - State: open - Opened by toloudis almost 2 years ago - 1 comment

#309 - transparency: too much overlapping

Issue - State: open - Opened by toloudis almost 2 years ago - 1 comment

#308 - color cells by scalar value; colorbar

Issue - State: open - Opened by rheiland almost 2 years ago - 3 comments
Labels: ux

#307 - Fix/init canvas size

Pull Request - State: closed - Opened by meganrm almost 2 years ago - 1 comment

#306 - AO on mesh in plasma model

Issue - State: closed - Opened by toloudis almost 2 years ago - 1 comment
Labels: bug

#305 - Implement orthographic camera view

Issue - State: closed - Opened by toloudis almost 2 years ago

#304 - bounding box should participate in depth cue-ing

Issue - State: open - Opened by toloudis almost 2 years ago
Labels: priority: low

#303 - ambient occlusion changes with zoom

Issue - State: closed - Opened by toloudis almost 2 years ago - 3 comments
Labels: bug

#302 - Update websocket messaging for octopus

Pull Request - State: closed - Opened by ascibisz almost 2 years ago - 1 comment

#301 - Bump webpack from 5.70.0 to 5.76.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#300 - Update example viewer for current octopus communication protocol

Issue - State: closed - Opened by blairlyons almost 2 years ago

#299 - Bump json5 from 1.0.1 to 1.0.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#298 - Bump json5 and css-loader

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#297 - Refactor web worker into proper source code file

Pull Request - State: closed - Opened by toloudis about 2 years ago - 1 comment

#296 - Add basic call for metrics calculation

Pull Request - State: closed - Opened by ascibisz about 2 years ago - 1 comment

#295 - Bump decode-uri-component from 0.2.0 to 0.2.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#294 - transpileES is including test files

Issue - State: open - Opened by meganrm about 2 years ago

#293 - Feature/dev build

Pull Request - State: closed - Opened by meganrm about 2 years ago - 5 comments

#292 - Feature/send smoldyn data to websocket

Pull Request - State: closed - Opened by ascibisz about 2 years ago - 3 comments

#291 - Bump loader-utils from 1.4.0 to 1.4.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#290 - Fix/worker loading

Pull Request - State: closed - Opened by toloudis over 2 years ago - 2 comments

#289 - Fix/workflows

Pull Request - State: closed - Opened by meganrm over 2 years ago - 2 comments

#288 - Adjust LOD number of atoms and distances

Issue - State: closed - Opened by blairlyons over 2 years ago - 2 comments
Labels: current sprint, 9

#287 - Use PDB model type in atom decimation calculations

Issue - State: open - Opened by blairlyons over 2 years ago

#286 - Add first key to path in smoldyn form

Pull Request - State: closed - Opened by ascibisz over 2 years ago - 1 comment

#285 - increase number of pdb atoms for levels of detail

Pull Request - State: closed - Opened by toloudis over 2 years ago - 4 comments

#284 - fix the "Hide All" in the demo viewer

Pull Request - State: closed - Opened by toloudis over 2 years ago - 1 comment

#283 - Show all and hide all are not working

Issue - State: closed - Opened by meganrm over 2 years ago
Labels: bug

#282 - Display data is now required

Issue - State: open - Opened by meganrm over 2 years ago - 5 comments
Labels: maintenance

#281 - Feature/improve cif loader

Pull Request - State: closed - Opened by toloudis over 2 years ago - 1 comment

#280 - Use transform offsets to render geometry files

Issue - State: open - Opened by blairlyons over 2 years ago - 1 comment

#279 - Feature/proto live mode

Pull Request - State: closed - Opened by toloudis over 2 years ago - 1 comment

#278 - Bump terser from 5.12.0 to 5.14.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#277 - download biological unit from pdb

Pull Request - State: closed - Opened by meganrm over 2 years ago - 1 comment

#275 - Implement ISimulator with editable state

Issue - State: closed - Opened by blairlyons almost 3 years ago - 3 comments
Labels: 8

#274 - Feature/UI template

Pull Request - State: closed - Opened by meganrm over 2 years ago - 5 comments

#273 - This function seems misnamed to me

Issue - State: open - Opened by meganrm over 2 years ago
Labels: maintenance

#272 - Example HIV PDB trajectory

Issue - State: open - Opened by jsavieo over 2 years ago

#270 - Release viewer with AO updates

Issue - State: closed - Opened by jsavieo over 2 years ago - 2 comments
Labels: 8

#268 - PDB geometry is not scaled by radius

Issue - State: open - Opened by blairlyons over 2 years ago - 1 comment
Labels: bug

#267 - Feature/tweak view settings for pdb

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 2 comments

#265 - Bump async from 2.6.3 to 2.6.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#262 - Feature/export i simularium file

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 2 comments

#261 - Feature/metaballs

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#260 - Feature/cubes

Pull Request - State: closed - Opened by meganrm almost 3 years ago - 2 comments

#259 - Bump minimist from 1.2.5 to 1.2.6

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#258 - Bump node-forge from 1.2.1 to 1.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#257 - Feature/refactor viewer from data

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#256 - Prototype transparency

Issue - State: open - Opened by blairlyons almost 3 years ago - 2 comments

#255 - Render metaballs

Issue - State: closed - Opened by blairlyons almost 3 years ago - 2 comments
Labels: 7

#253 - [Record Movies] Allow user to start recording a movie when a trajectory is playing

Issue - State: closed - Opened by schoinh almost 3 years ago - 1 comment

#252 - [Record Movies] Enable SharedArrayBuffer for non-dev environment

Issue - State: closed - Opened by schoinh almost 3 years ago - 8 comments

#251 - Prototype movie saving

Pull Request - State: closed - Opened by schoinh almost 3 years ago - 3 comments

#250 - fix focus when fiber was clicked by checking for correct type

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#249 - Feature/cam capture

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#248 - Specification for new rendering use cases

Issue - State: closed - Opened by blairlyons almost 3 years ago
Labels: ux

#247 - Feature/load binary trajectories

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#246 - Bump follow-redirects from 1.14.7 to 1.14.8

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#244 - Feature/update three

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#243 - Bump node-fetch from 2.6.6 to 2.6.7

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago

#242 - correct args passed to eslint

Pull Request - State: closed - Opened by toloudis about 3 years ago - 3 comments

#241 - Bump three from 0.131.3 to 0.137.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments

#240 - Prototype movie saving

Issue - State: closed - Opened by blairlyons about 3 years ago

#239 - Focus on fiber

Issue - State: closed - Opened by blairlyons about 3 years ago - 1 comment

#238 - User is not notified of failure to establish a new WebSocket connection

Issue - State: closed - Opened by schoinh about 3 years ago - 1 comment
Labels: bug

#237 - Prototype initial autoconversion UI - Smoldyn

Issue - State: closed - Opened by blairlyons about 3 years ago - 3 comments
Labels: current sprint, 8

#236 - fix the sample app build: css file was not being pre built

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#235 - Fix/frame time issues when streamed trajectory doesn't start at t=0

Pull Request - State: closed - Opened by schoinh about 3 years ago - 1 comment

#234 - Frame time issues with endocytosis

Issue - State: closed - Opened by schoinh about 3 years ago - 2 comments
Labels: bug

#231 - [TEST BED APP] - Show/Hide all isn't working

Issue - State: open - Opened by meganrm about 3 years ago - 1 comment
Labels: bug

#224 - Clean up `dragAndDropFileInfo` and `visData`

Issue - State: closed - Opened by meganrm over 3 years ago - 2 comments
Labels: question, maintenance

GitHub / simularium/simularium-viewer issues and pull requests