Ecosyste.ms: Issues

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GitHub / simroux/virsorter issues and pull requests

#43 - Custom database - How to?

Issue - State: open - Opened by MeggyC over 5 years ago - 11 comments

#43 - Custom database - How to?

Issue - State: open - Opened by MeggyC over 5 years ago - 11 comments

#42 - Minor usability updates

Pull Request - State: closed - Opened by telatin over 5 years ago - 1 comment

#42 - Minor usability updates

Pull Request - State: closed - Opened by telatin over 5 years ago - 1 comment

#41 - Output directory exists: no warning

Issue - State: closed - Opened by telatin over 5 years ago - 1 comment

#41 - Output directory exists: no warning

Issue - State: closed - Opened by telatin over 5 years ago - 1 comment

#40 - Virome decontamination setting on non-viral metagenomes

Issue - State: open - Opened by Binvir over 5 years ago - 9 comments

#40 - Virome decontamination setting on non-viral metagenomes

Issue - State: open - Opened by Binvir over 5 years ago - 9 comments

#39 - BLASTp error conda installation

Issue - State: open - Opened by jw51 over 5 years ago - 1 comment

#39 - BLASTp error conda installation

Issue - State: open - Opened by jw51 over 5 years ago - 1 comment

#38 - Encode.c error

Issue - State: closed - Opened by YiweiZhu almost 6 years ago - 3 comments

#38 - Encode.c error

Issue - State: closed - Opened by YiweiZhu almost 6 years ago - 3 comments

#37 - VIRSorter_global_phage_signal.csv is not machine readable

Issue - State: open - Opened by rec3141 almost 6 years ago - 2 comments

#37 - VIRSorter_global_phage_signal.csv is not machine readable

Issue - State: open - Opened by rec3141 almost 6 years ago - 2 comments

#36 - mga is not detected on OSX

Issue - State: closed - Opened by simone-pignotti about 6 years ago - 2 comments

#36 - mga is not detected on OSX

Issue - State: closed - Opened by simone-pignotti about 6 years ago - 2 comments

#35 - Impossible to install Pfam to target location

Issue - State: open - Opened by SilasK about 6 years ago - 3 comments

#35 - Impossible to install Pfam to target location

Issue - State: open - Opened by SilasK about 6 years ago - 3 comments

#34 - instructions for installing mga appear to hae small error

Issue - State: closed - Opened by elsherbini over 6 years ago - 1 comment

#34 - instructions for installing mga appear to hae small error

Issue - State: closed - Opened by elsherbini over 6 years ago - 1 comment

#33 - 'tar -zxvf' erorr about the database file

Issue - State: open - Opened by quliping over 6 years ago - 4 comments

#33 - 'tar -zxvf' erorr about the database file

Issue - State: open - Opened by quliping over 6 years ago - 4 comments

#32 - Error in Sliding_windows_3

Issue - State: closed - Opened by jordangumm over 6 years ago - 2 comments

#32 - Error in Sliding_windows_3

Issue - State: closed - Opened by jordangumm over 6 years ago - 2 comments

#31 - VirSorter conda version not running

Issue - State: closed - Opened by cmajones over 6 years ago - 15 comments

#31 - VirSorter conda version not running

Issue - State: closed - Opened by cmajones over 6 years ago - 15 comments

#30 - VIRSorter_global-phage-signal.csv has no content

Issue - State: open - Opened by 473021677 over 6 years ago - 18 comments

#30 - VIRSorter_global-phage-signal.csv has no content

Issue - State: open - Opened by 473021677 over 6 years ago - 18 comments

#28 - Diamond version error?

Issue - State: closed - Opened by istmobiome almost 7 years ago - 22 comments

#28 - Diamond version error?

Issue - State: closed - Opened by istmobiome almost 7 years ago - 22 comments

#27 - cat: r_0/Contigs_prots_vs_New_clusters.tab: No such file or directory

Issue - State: closed - Opened by chadsmith123 almost 7 years ago - 9 comments

#27 - cat: r_0/Contigs_prots_vs_New_clusters.tab: No such file or directory

Issue - State: closed - Opened by chadsmith123 almost 7 years ago - 9 comments

#26 - No phage signal in output VIRsorter

Issue - State: closed - Opened by miasungeunlee almost 7 years ago - 2 comments

#26 - No phage signal in output VIRsorter

Issue - State: closed - Opened by miasungeunlee almost 7 years ago - 2 comments

#25 - conda recipe yeilds perl-file-which=5.22, with perl=5.26

Issue - State: closed - Opened by kgh03 almost 7 years ago - 2 comments

#25 - conda recipe yeilds perl-file-which=5.22, with perl=5.26

Issue - State: closed - Opened by kgh03 almost 7 years ago - 2 comments

#24 - Add parallelization and additional user options

Pull Request - State: closed - Opened by brymerr921 almost 7 years ago

#24 - Add parallelization and additional user options

Pull Request - State: closed - Opened by brymerr921 almost 7 years ago

#23 - Bug in Step_3 is freezing the script

Issue - State: closed - Opened by brymerr921 about 7 years ago - 1 comment

#23 - Bug in Step_3 is freezing the script

Issue - State: closed - Opened by brymerr921 about 7 years ago - 1 comment

#22 - Errors running from dockerhub

Issue - State: open - Opened by blue-moon22 about 7 years ago - 1 comment

#22 - Errors running from dockerhub

Issue - State: open - Opened by blue-moon22 about 7 years ago - 1 comment

#21 - Unable to download virsorter-data.tar.gz from Cyverse DE

Issue - State: closed - Opened by blue-moon22 about 7 years ago - 2 comments

#21 - Unable to download virsorter-data.tar.gz from Cyverse DE

Issue - State: closed - Opened by blue-moon22 about 7 years ago - 2 comments

#20 - SUP05_SAGs_with_viruses.fna not available on cyverse

Issue - State: closed - Opened by EricDeveaud over 7 years ago - 1 comment

#20 - SUP05_SAGs_with_viruses.fna not available on cyverse

Issue - State: closed - Opened by EricDeveaud over 7 years ago - 1 comment

#19 - please provide a release tag

Issue - State: closed - Opened by EricDeveaud over 7 years ago - 2 comments

#19 - please provide a release tag

Issue - State: closed - Opened by EricDeveaud over 7 years ago - 2 comments

#18 - Perl wrapper vs Iplant output

Issue - State: closed - Opened by WardDeb over 7 years ago - 11 comments

#18 - Perl wrapper vs Iplant output

Issue - State: closed - Opened by WardDeb over 7 years ago - 11 comments

#17 - Problems running (Dockerhub) Virsorter on a Server

Issue - State: closed - Opened by DanieleDeco over 7 years ago - 14 comments

#17 - Problems running (Dockerhub) Virsorter on a Server

Issue - State: closed - Opened by DanieleDeco over 7 years ago - 14 comments

#15 - How to download the database?

Issue - State: closed - Opened by jolespin over 7 years ago - 11 comments

#15 - How to download the database?

Issue - State: closed - Opened by jolespin over 7 years ago - 11 comments

#14 - update docker

Issue - State: closed - Opened by rprops over 7 years ago - 1 comment

#14 - update docker

Issue - State: closed - Opened by rprops over 7 years ago - 1 comment

#12 - errors from dockerhub virsoter

Issue - State: closed - Opened by DanieleDeco almost 8 years ago - 4 comments

#11 - Running wrapper script with a custom database

Issue - State: open - Opened by aelbehery almost 8 years ago - 4 comments

#10 - --ncpu argument not working

Issue - State: closed - Opened by shaman-narayanasamy almost 8 years ago - 10 comments

#9 - I got an error message from virsorter of dockerhub

Issue - State: closed - Opened by minsookim1983 over 8 years ago - 4 comments

#8 - Convenient access to data

Issue - State: closed - Opened by shaman-narayanasamy over 8 years ago - 5 comments

#7 - Fix issues in Step_first_add_custom_phage_sequence.pl

Issue - State: closed - Opened by brymerr921 over 8 years ago - 2 comments

#6 - An error from virsorter of cyverse

Issue - State: closed - Opened by minsookim1983 over 8 years ago - 1 comment

#5 - Predicted_viral_sequences gbk files

Issue - State: closed - Opened by ovpop100 almost 9 years ago - 2 comments

#4 - Running VirSorter from perl wrapper script

Issue - State: closed - Opened by driscolc almost 9 years ago - 21 comments

#3 - initial setup and /wdir/fasta/VIRSorter_prots.fasta

Issue - State: closed - Opened by naarkhoo about 9 years ago - 11 comments

#2 - VirSorter on Docker

Issue - State: closed - Opened by shaman-narayanasamy over 9 years ago - 1 comment

#1 - Availability

Issue - State: closed - Opened by shaman-narayanasamy over 9 years ago - 4 comments