Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / simroux/virsorter issues and pull requests

#93 - Identification of viral like genes

Issue - State: open - Opened by 473021677 4 months ago - 6 comments

#93 - Identification of viral like genes

Issue - State: open - Opened by 473021677 4 months ago - 6 comments

#92 - No sequences in Predicted_viral_sequences/ files

Issue - State: open - Opened by emily-ap 6 months ago - 4 comments

#92 - No sequences in Predicted_viral_sequences/ files

Issue - State: open - Opened by emily-ap 6 months ago - 4 comments

#91 - conda shows Perl_xs_apiversion_bootcheck

Issue - State: closed - Opened by Nivskrishnan05 about 2 years ago

#91 - conda shows Perl_xs_apiversion_bootcheck

Issue - State: closed - Opened by Nivskrishnan05 about 2 years ago

#90 - I have warnings in the error file that I do not understand.

Issue - State: open - Opened by ewars over 2 years ago - 2 comments

#90 - I have warnings in the error file that I do not understand.

Issue - State: open - Opened by ewars over 2 years ago - 2 comments

#89 - Missing output data

Issue - State: open - Opened by xiaozhangzhang123 over 2 years ago - 1 comment

#89 - Missing output data

Issue - State: open - Opened by xiaozhangzhang123 over 2 years ago - 1 comment

#88 - Cannot execute wrapper..

Issue - State: closed - Opened by franztastic over 3 years ago - 5 comments

#88 - Cannot execute wrapper..

Issue - State: closed - Opened by franztastic over 3 years ago - 5 comments

#87 - Run termination

Issue - State: closed - Opened by 18AS almost 4 years ago - 1 comment

#87 - Run termination

Issue - State: closed - Opened by 18AS almost 4 years ago - 1 comment

#86 - Prophage regions

Issue - State: open - Opened by niamhlacy almost 4 years ago - 1 comment

#86 - Prophage regions

Issue - State: open - Opened by niamhlacy almost 4 years ago - 1 comment

#85 - error during virsorter2 run

Issue - State: closed - Opened by javadgh6 about 4 years ago - 1 comment

#85 - error during virsorter2 run

Issue - State: closed - Opened by javadgh6 about 4 years ago - 1 comment

#84 - Where to download files needed for --data-dir parameter

Issue - State: open - Opened by flannsmith about 4 years ago - 1 comment

#84 - Where to download files needed for --data-dir parameter

Issue - State: open - Opened by flannsmith about 4 years ago - 1 comment

#83 - Split a large fasta file

Issue - State: closed - Opened by chenyj8 about 4 years ago - 1 comment

#83 - Split a large fasta file

Issue - State: closed - Opened by chenyj8 about 4 years ago - 1 comment

#82 - Metric_files/VIRSorter_affi-contigs.tab "start-end-length" issues:

Issue - State: closed - Opened by ameisesophie about 4 years ago - 5 comments

#82 - Metric_files/VIRSorter_affi-contigs.tab "start-end-length" issues:

Issue - State: closed - Opened by ameisesophie about 4 years ago - 5 comments

#80 - Multiple assembly files

Issue - State: closed - Opened by DeaconOfBiology over 4 years ago - 3 comments

#80 - Multiple assembly files

Issue - State: closed - Opened by DeaconOfBiology over 4 years ago - 3 comments

#79 - Update wrapper_phage_contigs_sorter_iPlant.pl for HPC and cloud running.

Pull Request - State: closed - Opened by burgsdorf over 4 years ago - 1 comment

#79 - Update wrapper_phage_contigs_sorter_iPlant.pl for HPC and cloud running.

Pull Request - State: closed - Opened by burgsdorf over 4 years ago - 1 comment

#78 - VIRSorter_global-phage-signal.csv and Predicted_viral_sequences directory empty

Issue - State: closed - Opened by sxh1136 over 4 years ago - 6 comments

#78 - VIRSorter_global-phage-signal.csv and Predicted_viral_sequences directory empty

Issue - State: closed - Opened by sxh1136 over 4 years ago - 6 comments

#77 - TypeError: reduction operation 'argmax' not allowed for this dtype

Issue - State: closed - Opened by neptuneyt over 4 years ago - 1 comment

#77 - TypeError: reduction operation 'argmax' not allowed for this dtype

Issue - State: closed - Opened by neptuneyt over 4 years ago - 1 comment

#76 - linear & circular Labeling chaos In the resulting Genebank file

Issue - State: open - Opened by fangzhou233 over 4 years ago - 1 comment

#76 - linear & circular Labeling chaos In the resulting Genebank file

Issue - State: open - Opened by fangzhou233 over 4 years ago - 1 comment

#73 - Getting 500 Error from Zenodo data repo?

Issue - State: closed - Opened by maximilianpress over 4 years ago - 3 comments

#73 - Getting 500 Error from Zenodo data repo?

Issue - State: closed - Opened by maximilianpress over 4 years ago - 3 comments

#72 - Different number of Viral contig

Issue - State: open - Opened by zhanwen-cheng almost 5 years ago - 1 comment

#72 - Different number of Viral contig

Issue - State: open - Opened by zhanwen-cheng almost 5 years ago - 1 comment

#71 - Step 1 failed

Issue - State: closed - Opened by kks-vir almost 5 years ago - 10 comments

#71 - Step 1 failed

Issue - State: closed - Opened by kks-vir almost 5 years ago - 10 comments

#70 - Perl: symbol lookup error, Perl_xs_apiversion_bootcheck

Issue - State: open - Opened by JiqiuWu almost 5 years ago - 1 comment

#70 - Perl: symbol lookup error, Perl_xs_apiversion_bootcheck

Issue - State: open - Opened by JiqiuWu almost 5 years ago - 1 comment

#69 - Detection of eukaryotic viruses?

Issue - State: open - Opened by rprops almost 5 years ago - 2 comments

#69 - Detection of eukaryotic viruses?

Issue - State: open - Opened by rprops almost 5 years ago - 2 comments

#68 - VirSorter predicts prophage that is longer than the actual contig size

Issue - State: closed - Opened by hoelzer almost 5 years ago - 3 comments

#68 - VirSorter predicts prophage that is longer than the actual contig size

Issue - State: closed - Opened by hoelzer almost 5 years ago - 3 comments

#66 - Difficulty in Understanding VIRSorter out file.

Issue - State: open - Opened by ghost almost 5 years ago - 2 comments

#66 - Difficulty in Understanding VIRSorter out file.

Issue - State: open - Opened by ghost almost 5 years ago - 2 comments

#65 - New anvi-export-gene-calls output kills virsorter_to_anvio.py

Issue - State: open - Opened by jarrodscott almost 5 years ago - 1 comment

#65 - New anvi-export-gene-calls output kills virsorter_to_anvio.py

Issue - State: open - Opened by jarrodscott almost 5 years ago - 1 comment

#64 - Issue running virsorter with diamond using conda and wrapper perl script.

Issue - State: closed - Opened by elsherbini almost 5 years ago - 3 comments

#64 - Issue running virsorter with diamond using conda and wrapper perl script.

Issue - State: closed - Opened by elsherbini almost 5 years ago - 3 comments

#63 - Step1 failed.!

Issue - State: closed - Opened by ghost almost 5 years ago - 21 comments

#63 - Step1 failed.!

Issue - State: closed - Opened by ghost almost 5 years ago - 21 comments

#62 - Step1 failed.!

Issue - State: closed - Opened by ghost almost 5 years ago

#62 - Step1 failed.!

Issue - State: closed - Opened by ghost almost 5 years ago

#61 - What is the meaning of parameter "--data-dir"?

Issue - State: open - Opened by xdli009 about 5 years ago - 1 comment

#61 - What is the meaning of parameter "--data-dir"?

Issue - State: open - Opened by xdli009 about 5 years ago - 1 comment

#60 - interpretation of Virsorter output

Issue - State: open - Opened by sbeiow about 5 years ago - 2 comments

#60 - interpretation of Virsorter output

Issue - State: open - Opened by sbeiow about 5 years ago - 2 comments

#59 - empty results because mga_linux_ia64 could not been executed

Issue - State: closed - Opened by bognabognabogna about 5 years ago - 3 comments

#59 - empty results because mga_linux_ia64 could not been executed

Issue - State: closed - Opened by bognabognabogna about 5 years ago - 3 comments

#58 - Use of uninitialized value in addition (+) (error?)

Issue - State: open - Opened by jarrodscott about 5 years ago - 10 comments

#58 - Use of uninitialized value in addition (+) (error?)

Issue - State: open - Opened by jarrodscott about 5 years ago - 10 comments

#56 - please check external command status

Issue - State: open - Opened by EricDeveaud over 5 years ago - 1 comment

#56 - please check external command status

Issue - State: open - Opened by EricDeveaud over 5 years ago - 1 comment

#55 - document version to use for external tools

Issue - State: open - Opened by EricDeveaud over 5 years ago

#55 - document version to use for external tools

Issue - State: open - Opened by EricDeveaud over 5 years ago

#54 - check for all required tools at startup.

Issue - State: open - Opened by EricDeveaud over 5 years ago

#54 - check for all required tools at startup.

Issue - State: open - Opened by EricDeveaud over 5 years ago

#53 - Step 1.3 error

Issue - State: closed - Opened by DNADoubleFelix over 5 years ago - 2 comments

#53 - Step 1.3 error

Issue - State: closed - Opened by DNADoubleFelix over 5 years ago - 2 comments

#52 - Multiple errors given by the new VirSorter script

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 9 comments

#52 - Multiple errors given by the new VirSorter script

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 9 comments

#51 - Backtracking to original contig name?

Issue - State: closed - Opened by jdwinkler-lanzatech over 5 years ago - 3 comments

#51 - Backtracking to original contig name?

Issue - State: closed - Opened by jdwinkler-lanzatech over 5 years ago - 3 comments

#50 - Only one predicted viral sequence

Issue - State: open - Opened by thr44pw00d over 5 years ago - 2 comments

#50 - Only one predicted viral sequence

Issue - State: open - Opened by thr44pw00d over 5 years ago - 2 comments

#49 - Custom Phage Sequence

Issue - State: open - Opened by ZarulHanifah over 5 years ago - 1 comment

#49 - Custom Phage Sequence

Issue - State: open - Opened by ZarulHanifah over 5 years ago - 1 comment

#48 - Multiple predicted viral regions in similar area of contig.

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 8 comments

#48 - Multiple predicted viral regions in similar area of contig.

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 8 comments

#47 - Error in gene prediction

Issue - State: open - Opened by Xiaojun928 over 5 years ago - 9 comments

#47 - Error in gene prediction

Issue - State: open - Opened by Xiaojun928 over 5 years ago - 9 comments

#46 - How to retrieve the coordinates of "viral" predicted regions

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 24 comments

#46 - How to retrieve the coordinates of "viral" predicted regions

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 24 comments

#45 - Outputs from Perl script and Cyverse version does not match

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 6 comments

#45 - Outputs from Perl script and Cyverse version does not match

Issue - State: closed - Opened by genomics-pixel over 5 years ago - 6 comments

#44 - Excessively large 'err' log file when running with custom phage db (--cp flag)

Issue - State: closed - Opened by mshamash over 5 years ago - 2 comments

#44 - Excessively large 'err' log file when running with custom phage db (--cp flag)

Issue - State: closed - Opened by mshamash over 5 years ago - 2 comments