simonsfoundation/inferelator_ng issues and pull requests

#73 - Refactoring MI into python

Pull Request - State: open - Opened by asistradition about 6 years ago - 1 comment

#72 - Ndv dmel run embryo data

Pull Request - State: open - Opened by cskokgibbs over 6 years ago

#71 - Modified Design Response Driver

Pull Request - State: closed - Opened by asistradition over 6 years ago

#70 - Memory optimization

Pull Request - State: closed - Opened by asistradition over 6 years ago - 2 comments

#69 - Purged R code and replaced with native python

Pull Request - State: closed - Opened by asistradition over 6 years ago - 4 comments

#68 - InfereClaDR

Pull Request - State: open - Opened by kostyat over 6 years ago - 1 comment

#67 - Ndv clean up tutorial fixing pr branch

Pull Request - State: closed - Opened by nickdeveaux over 6 years ago - 3 comments

#66 - Ndv fix relative imports python3

Pull Request - State: closed - Opened by nickdeveaux over 6 years ago - 1 comment

#65 - Ndv fix relative imports python3

Pull Request - State: closed - Opened by nickdeveaux over 6 years ago - 1 comment

#64 - Running Inferelator on NYU HPC with KVS

Issue - State: closed - Opened by kostyat over 6 years ago - 7 comments

#63 - Ndv dont share mi clr but still lock per bootstrap

Pull Request - State: open - Opened by nickdeveaux almost 7 years ago - 5 comments

#62 - TFA drop duplicates

Issue - State: open - Opened by dayanne-castro almost 7 years ago - 2 comments

#61 - New workflow for making the gold standard from a 50/50 split in the p…

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 6 comments

#60 - moved changes from older branch ndv_design_response_delTmin_bug to here

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 2 comments

#59 - Ndv teardown timely

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 1 comment

#58 - Ndv aaron watters pr kvs

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 1 comment

#58 - Ndv aaron watters pr kvs

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 1 comment

#57 - Use kvs module

Pull Request - State: closed - Opened by AaronWatters almost 7 years ago - 2 comments

#56 - Ndv design response del tmin bug

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 5 comments

#56 - Ndv design response del tmin bug

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 5 comments

#55 - removed redundant lines of code, like X=X

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 3 comments

#54 - test the kvs implementation of bbsr

Pull Request - State: closed - Opened by nickdeveaux almost 7 years ago - 3 comments

#53 - inferelator should run from any directory

Issue - State: open - Opened by AaronWatters about 7 years ago - 1 comment

#52 - Ndv short script check slurm

Pull Request - State: closed - Opened by nickdeveaux about 7 years ago - 5 comments

#51 - Running without KVS

Issue - State: closed - Opened by kostyat about 7 years ago - 7 comments

#50 - removed unused code to make debugging unit tests easier

Pull Request - State: closed - Opened by nickdeveaux about 7 years ago - 2 comments

#49 - Ndv bbsr cluster with refactor merged in with md5sum

Pull Request - State: closed - Opened by nickdeveaux about 7 years ago

#48 - reduce number of predictors should probably use backwards or forwards selection

Issue - State: open - Opened by AaronWatters over 7 years ago

#47 - Ndv cross validation

Pull Request - State: open - Opened by nickdeveaux over 7 years ago - 1 comment

#46 - Should use standard doc strings

Issue - State: open - Opened by AaronWatters over 7 years ago

#45 - prior + BBSR workflow and example input files

Pull Request - State: open - Opened by dayanne-castro over 7 years ago - 1 comment

#44 - Bbsr cluster with refactor merged in

Pull Request - State: closed - Opened by nickdeveaux over 7 years ago - 8 comments

#43 - Translation.py

Pull Request - State: closed - Opened by tymor22 over 7 years ago - 2 comments

#42 - Bbsr refactor

Pull Request - State: closed - Opened by tymor22 over 7 years ago - 14 comments

#41 - MI tests failing

Issue - State: open - Opened by dayanne-castro over 7 years ago - 4 comments

#40 - replaced design response R code with python implementation

Pull Request - State: closed - Opened by tymor22 over 7 years ago - 4 comments

#39 - Update Bsubtilis example dataset

Pull Request - State: closed - Opened by ryi06 almost 8 years ago - 2 comments

#38 - Fix display error when plotting PR curve on HPC

Pull Request - State: closed - Opened by ryi06 almost 8 years ago - 1 comment

#37 - Workflow hierarchy

Pull Request - State: closed - Opened by nickdeveaux almost 8 years ago - 3 comments

#36 - Update yeast_bbsr_workflow.py

Pull Request - State: closed - Opened by gs512 almost 8 years ago - 4 comments

#35 - Yeast tutorial

Pull Request - State: closed - Opened by nickdeveaux almost 8 years ago - 4 comments

#34 - Added the yeast workflow

Pull Request - State: closed - Opened by kostyat about 8 years ago - 2 comments

#33 - new functionality for auto-creating default metadata

Pull Request - State: closed - Opened by nickdeveaux about 8 years ago - 2 comments

#32 - add blahblah to devnotes primarily to see if the travis build fails

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 4 comments

#31 - Python 3 and relative imports

Issue - State: open - Opened by dayanne-castro over 8 years ago - 4 comments

#30 - GS values now positive

Pull Request - State: closed - Opened by dayanne-castro over 8 years ago - 3 comments

#29 - Precision-Recall

Pull Request - State: closed - Opened by dayanne-castro over 8 years ago

#28 - Refactor design/response into Python

Issue - State: open - Opened by e5c over 8 years ago - 4 comments

#27 - design and response shouldn't check names in R since that converts + …

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 2 comments

#26 - Multitask learning using mix of elementwise and block sparsity

Pull Request - State: closed - Opened by dayanne-castro over 8 years ago - 3 comments

#25 - added dayanne's priors and tests

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 2 comments

#24 - Dayanne priors

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 3 comments

#23 - switched row and col names

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 4 comments

#22 - Prior class

Pull Request - State: closed - Opened by dayanne-castro over 8 years ago - 5 comments

#21 - Build test

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 1 comment

#20 - setup.py does not copy required support files

Issue - State: open - Opened by AaronWatters over 8 years ago - 1 comment

#19 - New workflows

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 27 comments

#18 - Workflow outline

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 5 comments

#17 - Refactor tfa

Pull Request - State: closed - Opened by ryi06 over 8 years ago - 3 comments

#16 - Add inferelator

Pull Request - State: open - Opened by AaronWatters over 8 years ago - 5 comments

#15 - removed tests directory, since it seemed vestigial

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 1 comment

#14 - BBSR.R

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 3 comments

#13 - Mi and clr r drivers

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 1 comment

#12 - Move useful functionality into utils

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 2 comments

#11 - Windows tests

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 2 comments

#10 - Got the tests work on Windows

Pull Request - State: closed - Opened by ryi06 over 8 years ago - 4 comments

#9 - Win port

Pull Request - State: closed - Opened by ryi06 over 8 years ago

#8 - windows_test

Pull Request - State: closed - Opened by ryi06 over 8 years ago

#7 - Add windows testing support maybe using appveyor

Issue - State: open - Opened by AaronWatters over 8 years ago

#6 - moved stuff around and added more text

Pull Request - State: closed - Opened by AaronWatters over 8 years ago - 4 comments

#5 - adding devnotes.md file

Pull Request - State: closed - Opened by kostyat over 8 years ago - 3 comments

#4 - development notes

Pull Request - State: closed - Opened by AaronWatters over 8 years ago

#3 - Ren_test_commit

Pull Request - State: closed - Opened by ryi06 over 8 years ago - 1 comment

#2 - fixed pep8 corrections

Pull Request - State: closed - Opened by kostyat over 8 years ago - 1 comment

#1 - readme update

Pull Request - State: closed - Opened by nickdeveaux over 8 years ago - 1 comment

GitHub / simonsfoundation/inferelator_ng issues and pull requests