Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / simonboothroyd/nonbonded issues and pull requests

#100 - Bump actions/setup-python from 2.2.2 to 2.3.2

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#99 - Add basic support for PBS and Slurm calculation backends

Pull Request - State: closed - Opened by SimonBoothroyd almost 3 years ago - 1 comment

#98 - Bump actions/setup-python from 2.2.2 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#97 - Bump actions/setup-python from 2.2.2 to 2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#96 - Expand input factories for local use

Pull Request - State: closed - Opened by SimonBoothroyd about 3 years ago - 2 comments
Labels: enhancement

#95 - Fix #94

Pull Request - State: closed - Opened by SimonBoothroyd about 3 years ago - 1 comment
Labels: bug

#94 - `nonbonded optimization analyze` cannot find PhysicalProperty.id

Issue - State: closed - Opened by lilyminium about 3 years ago - 1 comment

#93 - Bump actions/checkout from 2.3.5 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#92 - Bump actions/checkout from 2.3.4 to 2.3.5

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#91 - Update CI to use py=3.8

Pull Request - State: closed - Opened by SimonBoothroyd about 3 years ago - 1 comment
Labels: ci

#90 - Support optimizing handler attributes

Pull Request - State: closed - Opened by SimonBoothroyd about 3 years ago
Labels: enhancement

#89 - Bump codecov/codecov-action from 1 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#88 - Bump codecov/codecov-action from 1 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#87 - Bump codecov/codecov-action from 1 to 2.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#86 - Bump codecov/codecov-action from 1 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#85 - Bump actions/setup-python from 2.2.1 to 2.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#84 - Bump actions/checkout from 2 to 2.3.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#83 - Bump conda-incubator/setup-miniconda from 2 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#82 - Bump codecov/codecov-action from 1 to 1.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#81 - Fix optimization data re-indexing not triggered

Pull Request - State: closed - Opened by SimonBoothroyd over 3 years ago
Labels: bug

#80 - Bump actions/setup-python from v2.2.1 to v2.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#79 - Fix flake8 F821 warnings

Pull Request - State: closed - Opened by SimonBoothroyd over 3 years ago - 1 comment
Labels: lint

#78 - Fix benchmark RMSD plot division by zero error

Pull Request - State: closed - Opened by SimonBoothroyd over 3 years ago - 1 comment
Labels: bug

#77 - Migrate to the OpenFF toolkit namespace

Pull Request - State: closed - Opened by SimonBoothroyd over 3 years ago - 1 comment
Labels: enhancement

#76 - Remove Unique Constraint from Software Version

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: bug

#75 - Optional Evaluator Data Caching

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#74 - Drop Parameter Evals for BCC Parameters

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#73 - Split Target Analysis into Separate Classes

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#72 - Fix Parsing Pip Dependencies

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: bug

#71 - Adds Endpoint for Updating Results

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#70 - Add CRUD Support for Updating Results

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#69 - Add DB Migration for Software Provenance Tables

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#68 - Store Calculation and Analysis Provenance

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#67 - Allow Multiple Categories for Data Set Result Entires

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#66 - Add GZip Support to RESTful API

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#65 - Bump actions/setup-python from v2.1.4 to v2.2.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 2 comments
Labels: dependencies

#64 - Bump actions/setup-python from v2.1.4 to v2.2.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 2 comments
Labels: dependencies

#63 - [REST] Use GET Endpoints for Plotly

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#62 - [REST] Attach Pagination Metadata Collections

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#61 - [PLOTLY] Add Support for Optimisation Target RMSE

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#60 - Fix Multi-Target and Empty Recharge Target Plotting

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: bug

#59 - Fix Creating Inputs for Optimizations of Trained Force Fields

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: bug

#58 - Fix Optimization ID Not Returned by Optimization CRUD

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: bug

#57 - Only Store Evaluator Train and Test Sets Once

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#56 - Drop Recharge ESP, Conformer and PCM Settings

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#55 - Replace Molecule Data Sets with QCA Data Sets

Pull Request - State: closed - Opened by SimonBoothroyd almost 4 years ago - 1 comment
Labels: enhancement

#54 - [PLOTLY] Skip Missing Optimisation Results

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: bug

#53 - [PLOTLY] Make Pandas a Top Level Import

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: lint

#52 - [PLOTLY] Fix REST Dependencies

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 2 comments
Labels: bug

#51 - Bump actions/setup-python from v1 to v2.1.4

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 2 comments
Labels: dependencies

#50 - [PLOTLY] Fix No Category and NaN Error Bars

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: bug

#49 - [PLOTLY] Enable x-error Bars

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#48 - [PLOTLY] Support Objective Functions from Multiple Optimizations

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#47 - Remove the Unused molecules API Point

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago
Labels: lint

#46 - Allow RESTful API to Return Without Children

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago
Labels: enhancement

#45 - Add Basic Plotly Support

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago
Labels: enhancement

#44 - Fix Plotting the RMSE of a Target with No Categories

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: bug

#43 - Add Model Versions to the Key Schemas

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#42 - Decouple Internal Units from OpenFF Evaluator

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#41 - Fix RechargeESPSettings Constraint

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: bug

#40 - Update to Recharge 0.0.1a4

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#39 - Ensure Correct ForceBalance Restart

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: bug

#38 - Refactor the Unique Mixin to be More Clear and Concise

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#37 - Re-style the Optimisation Plots

Pull Request - State: closed - Opened by SimonBoothroyd about 4 years ago - 1 comment
Labels: enhancement

#36 - Remove Curation Utilities

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: lint

#35 - Support OpenFF Evaluator ForceFieldSource Objects

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#34 - Correctly Handle Missing Columns when Converting Density Data

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#33 - Fix Missing Comma Between DOI Regex Patterns

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 2 comments
Labels: bug

#32 - Pin the OpenFF Toolkit <0.7.0 until ForceBalance is Compatible

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: ci

#31 - OpenFF Toolkit 0.7.0 Compatability

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#30 - Adds Curation Component to Import FreeSolv

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 3 comments
Labels: enhancement

#29 - Generalise the Force Field Content Field

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#28 - Fix Reindex Warning in Temperature and Pressure Filters

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#27 - Add Filter for Racemic Mixtures

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#26 - Select Substances on a Per Property Basis

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#25 - Filter by Mole Fractions

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#24 - Add Curation Component to Interconvert Density Properties

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#23 - Expose Extra Optimisation Options for ForceBalance and Evaluator

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#22 - Exclude Coverage of TYPE_CHECKING Blocks

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: ci

#21 - Allow a Precision of Zero when Filtering Duplicates

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#20 - Disable Codecov Patch Check and Add Threshold

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago
Labels: ci

#19 - Fixes Temporary CD to the Current Directory

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#18 - Fix State Selection for more than One N Components

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#17 - Adds Strict Filtering of Property Types

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#16 - Add Finger Print Based Substance Selection

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago
Labels: enhancement

#15 - Fixes Reading Benchmark Results

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#14 - Fix Re-indexing Data Sets with Exact Amounts

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: bug

#13 - Add a New ID Validator Type

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#12 - Add CLI List Commands.

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#11 - Allow Benchmarking of Arbitrary Force Fields

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: enhancement

#10 - Add Tests for the Core CLIs

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: testing

#9 - Add Tests for the Curation Modules.

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: testing

#8 - Add Tests of each of the Utility Modules

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: testing

#7 - Add Basic Tests for the Statistics Module

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: testing

#6 - Omit the Alembic Migration Files From Analysis

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: lint

#5 - Refactor and Test the REST API

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 2 comments
Labels: testing

#4 - Add Tests for the Backend CRUD

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 2 comments
Labels: testing

#3 - Fix LGTM Alerts

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 2 comments
Labels: lint

#2 - Testing Overhaul

Issue - State: closed - Opened by SimonBoothroyd over 4 years ago

#1 - Add Tests for Library Models

Pull Request - State: closed - Opened by SimonBoothroyd over 4 years ago - 1 comment
Labels: testing