signaturescience/skater issues and pull requests

#58 - v0.1.2

Pull Request - State: closed - Opened by stephenturner almost 2 years ago

#57 - Fix for dev dplyr

Pull Request - State: closed - Opened by hadley almost 2 years ago - 1 comment

#56 - Convert `degree_truth` to character early

Pull Request - State: closed - Opened by DavisVaughan almost 3 years ago

#55 - Revisions

Pull Request - State: closed - Opened by stephenturner almost 3 years ago

#54 - F1000 submission

Issue - State: closed - Opened by stephenturner almost 3 years ago

#53 - F1000Research paper

Pull Request - State: closed - Opened by stephenturner almost 3 years ago

#52 - format submission for JOSS

Pull Request - State: closed - Opened by stephenturner about 3 years ago

#51 - Vignette and draft manuscript

Pull Request - State: closed - Opened by stephenturner about 3 years ago

#50 - Create a vignette

Issue - State: closed - Opened by stephenturner over 3 years ago - 3 comments

#49 - LICENSE

Issue - State: closed - Opened by stephenturner over 3 years ago

#48 - Write a paper

Issue - State: closed - Opened by stephenturner over 3 years ago - 9 comments

#47 - Add map installed data and update read_map() functionality

Pull Request - State: closed - Opened by stephenturner over 3 years ago - 1 comment

#46 - optimize kin2degree

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#45 - edits to read_ibd and ibd2kin and read_map

Pull Request - State: closed - Opened by vpnagraj over 3 years ago - 5 comments

#44 - read_ibd dies on empty file

Issue - State: closed - Opened by genignored over 3 years ago - 4 comments

#43 - first pass at including ibd utils and relatedness functions

Pull Request - State: closed - Opened by vpnagraj over 3 years ago - 17 comments

#42 - Reciprocal RMSE + 0.5 on categorical data

Pull Request - State: closed - Opened by stephenturner over 3 years ago - 3 comments

#41 - Arrange IDs and Plink2 KING reader

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#40 - New function to read in plink2's KING robust estimator results

Issue - State: closed - Opened by stephenturner over 3 years ago

#39 - New function to order IDs, and put into all read_ functions

Issue - State: closed - Opened by stephenturner over 3 years ago - 1 comment

#38 - more robust accuracy metrics for confusion matrix counts

Issue - State: closed - Opened by vpnagraj over 3 years ago - 5 comments

#37 - estimate kinship from IBD segments (both simulated and detected)

Issue - State: closed - Opened by stephenturner over 3 years ago - 13 comments

#36 - Ped2kinpairs interesting situation

Issue - State: closed - Opened by genignored over 3 years ago - 2 comments

#35 - Alterations to read_fam

Issue - State: closed - Opened by genignored over 3 years ago - 6 comments

#34 - be explicit about namespaces fixes #33 see also #32

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#33 - remove importFrom in confusion_matrix

Issue - State: closed - Opened by stephenturner over 3 years ago

#32 - IBIS coef read function and example data

Pull Request - State: closed - Opened by genignored over 3 years ago

#31 - read_akt

Pull Request - State: closed - Opened by genignored over 3 years ago - 1 comment

#30 - rebuild readme test CI

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#29 - ci on nonmaster

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#28 - Estimated cM from kinship coefficient

Issue - State: closed - Opened by stephenturner over 3 years ago

#27 - Modified confusion_matrix from confusionMatrix

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#26 - Expand founders

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#25 - Confusion matrix

Issue - State: closed - Opened by stephenturner over 3 years ago - 3 comments

#24 - Type checking on plot_pedigree()

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#23 - Minor issue with plot_pedigree

Issue - State: closed - Opened by genignored over 3 years ago - 1 comment

#22 - Less stringent 1000G founders

Issue - State: closed - Opened by stephenturner over 3 years ago

#21 - Documentation, fam2ped api change, data

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#20 - split read and write from fam2ped

Issue - State: closed - Opened by stephenturner over 3 years ago

#19 - Degree inference; tests

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#18 - use testthat ; use test

Issue - State: closed - Opened by stephenturner over 3 years ago

#17 - Potential issue with ped2kinpair

Issue - State: closed - Opened by genignored over 3 years ago - 1 comment

#16 - New function to infer degree from kinship coefficient

Issue - State: closed - Opened by stephenturner over 3 years ago - 3 comments

#15 - add badge #13

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#14 - suppress note for lifecycle import

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#13 - Add simple CI

Issue - State: closed - Opened by stephenturner over 3 years ago - 4 comments

#12 - usethis::use_gpl3_license() fixes #4

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#11 - Add 1000G pedigree, parse, unrelated sample IDs w/ data

Issue - State: closed - Opened by stephenturner over 3 years ago

#10 - Docs, lifecycle

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#9 - add @genignored to author list

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#8 - Improve README

Issue - State: closed - Opened by stephenturner over 3 years ago

#7 - pkgdown, hotfixes

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#6 - Add test data and fix affected status

Pull Request - State: closed - Opened by stephenturner over 3 years ago

#5 - Affected Status

Issue - State: closed - Opened by genignored over 3 years ago - 1 comment

#4 - Add LICENSE

Issue - State: closed - Opened by stephenturner over 3 years ago

#3 - Add CONTRIBUTING

Issue - State: closed - Opened by stephenturner over 3 years ago

#2 - use lifecycle

Issue - State: closed - Opened by stephenturner over 3 years ago

#1 - add data: ped-sim families

Issue - State: closed - Opened by stephenturner over 3 years ago - 1 comment

GitHub / signaturescience/skater issues and pull requests