Ecosyste.ms: Issues

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GitHub / signalbash/how_are_we_stranded_here issues and pull requests

#23 - Updated check_strandedness.py

Pull Request - State: closed - Opened by mikailbala 4 months ago

#22 - Can't find any of the first 10 BED transcript_ids in fasta file

Issue - State: open - Opened by eggrandio 6 months ago - 1 comment

#21 - No output

Issue - State: open - Opened by ducphuc2000 8 months ago - 1 comment

#20 - Getting Error while indexing BAM file

Issue - State: open - Opened by sanyalab 12 months ago - 3 comments

#19 - installation problem regarding glibc

Issue - State: open - Opened by sofiapuvogelvittini over 1 year ago

#18 - Ensembl GRCm39 v109 GTF / ...cds.all.fa Parse Issue

Issue - State: open - Opened by MikeWLloyd almost 2 years ago

#17 - Tried to run on single strand mode, not working

Issue - State: open - Opened by ryanpe13002 almost 2 years ago - 2 comments

#16 - Containers...

Issue - State: open - Opened by BarryDigby over 2 years ago

#15 - fix compatibility issue with newline separator

Pull Request - State: open - Opened by ftschirpke over 2 years ago - 2 comments

#14 - not working with pyhton 3.9

Issue - State: open - Opened by robenimmersatt over 2 years ago - 3 comments

#13 - Error: kallisto index file not found kallisto_index

Issue - State: open - Opened by wbvguo over 2 years ago - 4 comments

#12 - Anyone successfully get this library to work?

Issue - State: closed - Opened by dshinzie over 2 years ago - 6 comments

#11 - this software cannot be used for the single-end RNA-seq data

Issue - State: open - Opened by jingydz almost 3 years ago - 2 comments

#10 - ValueError: Specified \n as separator or delimiter.

Issue - State: closed - Opened by manivenkatesan almost 3 years ago - 4 comments

#9 - NameError when converting gtf to bed

Issue - State: closed - Opened by sarah872 about 3 years ago - 1 comment

#8 - Can't find transcript ids from fasta in bed

Issue - State: open - Opened by XMTian about 3 years ago - 4 comments

#7 - newline characters in Fasta header cause mismatch

Issue - State: closed - Opened by wowwish over 3 years ago - 2 comments

#6 - check_strandedness error with how_are_we_stranded_here

Issue - State: closed - Opened by venkan over 4 years ago - 8 comments

#4 - pandas is missing from the requirement.txt

Issue - State: closed - Opened by wckdouglas about 5 years ago - 1 comment

#3 - Add a check on if the fastq is gzipped or now

Pull Request - State: closed - Opened by aleighbrown about 5 years ago

#2 - Total 0 usable reads were sampled

Issue - State: closed - Opened by aleighbrown about 5 years ago - 2 comments

#1 - Installation with pip doesn't seem to quite work

Issue - State: closed - Opened by aleighbrown about 5 years ago - 1 comment