sidhomj/DeepTCR issues and pull requests

#85 - Issue loading single cell data

Issue - State: open - Opened by leeanapeters 5 months ago - 1 comment

#84 - more detailed tutorials or instructions

Issue - State: open - Opened by arnavaz 9 months ago

#83 - Recommendations for handling large datasets

Issue - State: open - Opened by leeanapeters over 1 year ago - 1 comment

#82 - Question about dropout rate

Issue - State: open - Opened by emm1R over 1 year ago

#81 - Optimization of the threshold parameter in hierarchical clustering

Issue - State: open - Opened by CharlineJnnt over 1 year ago - 1 comment

#80 - Understanding Training Strategy of Supervised TCR repertoire classification on HIV dataset

Issue - State: open - Opened by Albert-Shuai over 1 year ago

#79 - Bump werkzeug from 0.16.0 to 2.2.3

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#78 - Bump certifi from 2020.12.5 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#77 - Bump pillow from 8.0.1 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#76 - Bump tensorflow from 2.7.0 to 2.9.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#75 - Performance

Issue - State: closed - Opened by zshu000000 almost 2 years ago

#74 - Bump joblib from 0.17.0 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#73 - Bump protobuf from 3.11.2 to 3.18.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#72 - Bump numpy from 1.18.0 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#71 - Suggestion for UMAP_Plot() function

Issue - State: open - Opened by psimps21 over 2 years ago

#70 - Bump tensorflow from 2.7.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#69 - Shared Motif for Clusters after Phenograph clustering

Issue - State: open - Opened by jkbenotmane over 2 years ago

#68 - Bump pillow from 8.0.1 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#67 - sequence_inference error

Issue - State: closed - Opened by Albert-Shuai over 2 years ago - 6 comments
Labels: help wanted

#66 - load previous-trained model

Issue - State: closed - Opened by hereagain-Y over 2 years ago - 3 comments

#65 - Can´t load own Data using DTCR_SS.Get_Data

Issue - State: closed - Opened by junyho486 over 2 years ago - 7 comments
Labels: bug

#64 - Bump protobuf from 3.11.2 to 3.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#63 - Bump tensorflow from 2.7.0 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#62 - Bump tensorflow from 2.7.0 to 2.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#61 - Bump numpy from 1.18.0 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#60 - How to export latent feature matrix resulted by VAE training

Issue - State: closed - Opened by Lijizhou2022 over 2 years ago - 4 comments
Labels: help wanted

#59 - Getting an import error when running 'from DeepTCR.DeepTCR import DeepTCR_U'

Issue - State: closed - Opened by dstcr over 2 years ago - 1 comment
Labels: help wanted

#58 - Bump pillow from 8.0.1 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#57 - The dataset used in the regression model

Issue - State: closed - Opened by zguo235 almost 3 years ago - 3 comments
Labels: help wanted

#56 - Extract accuracy of decoded TCRs from Sequence_inference

Issue - State: closed - Opened by JulianSpagnuolo almost 3 years ago - 1 comment
Labels: enhancement

#55 - No Sample Labels on Dendrogramplots

Issue - State: closed - Opened by jkbenotmane almost 3 years ago
Labels: enhancement

#54 - Download with docker

Issue - State: closed - Opened by Portulaca666 almost 3 years ago - 2 comments
Labels: help wanted

#53 - Tutorial: Clustering TCR Sequences list index out of Range Error when using DeepTCR in WSL

Issue - State: closed - Opened by jkbenotmane almost 3 years ago - 1 comment
Labels: help wanted

#52 - Bump pillow from 8.0.1 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#51 - Sequence not featurized

Issue - State: closed - Opened by fbenedett about 3 years ago - 7 comments
Labels: help wanted

#50 - Inquiry about Fig2.c Motifs Visualization in DeepTCR

Issue - State: closed - Opened by pzhang84 about 3 years ago - 1 comment
Labels: help wanted

#49 - Bump tensorflow-gpu from 2.3.1 to 2.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#48 - Bump tensorflow-gpu from 2.3.1 to 2.4.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#47 - run DeepTCR using more than one GPUs

Issue - State: closed - Opened by qidi-yang about 3 years ago - 3 comments
Labels: help wanted

#46 - Interpreting Sequence_Inference output

Issue - State: open - Opened by CurlsForScience about 3 years ago - 2 comments

#45 - Bump pillow from 8.0.1 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#44 - Bump urllib3 from 1.26.2 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#43 - Bump rsa from 4.6 to 4.7

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#42 - -

Issue - State: closed - Opened by jkbenotmane over 3 years ago

#41 - Bump urllib3 from 1.26.2 to 1.26.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#40 - Availability of trained models

Issue - State: closed - Opened by jannisborn over 3 years ago - 1 comment
Labels: help wanted

#39 - Bump urllib3 from 1.26.2 to 1.26.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#38 - Bump pillow from 8.0.1 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#37 - Bump tensorflow-gpu from 2.3.1 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#36 - Reproducible clustering

Issue - State: closed - Opened by emm1R almost 4 years ago - 5 comments
Labels: help wanted

#35 - Question about incomplete data

Issue - State: closed - Opened by emm1R almost 4 years ago - 4 comments
Labels: help wanted

#34 - Error when changing max_length

Issue - State: closed - Opened by emm1R almost 4 years ago - 4 comments
Labels: bug

#33 - Information

Issue - State: closed - Opened by sinnamone almost 4 years ago - 1 comment
Labels: help wanted

#32 - Bump tensorflow from 1.15.2 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#31 - Bump tensorflow-gpu from 1.15.2 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#30 - ValueError when running "8 - VAE Inference" in unsupervised tutorials

Issue - State: closed - Opened by marrojwala about 4 years ago - 1 comment
Labels: bug

#29 - Tensor shape mismatch while running "2 - Supervised Repertoire Classification" Tutorial

Issue - State: closed - Opened by marrojwala about 4 years ago - 2 comments
Labels: bug

#28 - Bump tensorflow from 1.15.2 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#27 - Bump tensorflow-gpu from 1.15.2 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#26 - Bump tensorflow from 1.15.0 to 1.15.2

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#25 - 'LabelEncoder' object has no attribute 'classes_' when loading own data

Issue - State: closed - Opened by GBeattie over 4 years ago - 2 comments
Labels: invalid

#24 - Bump tensorflow from 1.15.0 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#23 - Bump tensorflow from 1.14.0 to 1.15.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#22 - Bump tensorflow-gpu from 1.14.0 to 1.15.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#21 - Add Pillow to requirements

Issue - State: closed - Opened by choosehappy almost 5 years ago - 6 comments
Labels: enhancement

#20 - Clustering error

Issue - State: closed - Opened by choosehappy almost 5 years ago - 15 comments
Labels: bug

#19 - Error while running 6 - KNN classification tutorial

Issue - State: closed - Opened by choosehappy almost 5 years ago - 3 comments
Labels: bug

#18 - Error while running tutorial

Issue - State: closed - Opened by choosehappy almost 5 years ago - 3 comments
Labels: bug

#17 - Wrong sklearn version

Issue - State: closed - Opened by choosehappy almost 5 years ago - 1 comment
Labels: bug

#16 - Alexbaras radplot updates

Pull Request - State: closed - Opened by alexbaras almost 5 years ago

#15 - Update Supervised_Repertoire_Human.py

Pull Request - State: closed - Opened by alexbaras almost 5 years ago

#14 - Update Supervised_Repertoire_Human.py

Pull Request - State: closed - Opened by alexbaras almost 5 years ago

#13 - white space fix for radplot

Pull Request - State: closed - Opened by alexbaras about 5 years ago - 1 comment

#12 - update to rad_plot

Pull Request - State: closed - Opened by alexbaras about 5 years ago - 1 comment

#11 - matched alpha beta

Issue - State: closed - Opened by hejing3283 over 5 years ago - 3 comments
Labels: help wanted

#10 - KNN_Repertoire_Classifer Error

Issue - State: closed - Opened by hejing3283 over 5 years ago - 2 comments
Labels: bug

#9 - KNN_Sequence_Classifier

Issue - State: closed - Opened by hejing3283 over 5 years ago - 4 comments
Labels: enhancement

#8 - example input hla files

Issue - State: closed - Opened by hejing3283 over 5 years ago - 5 comments
Labels: question

#7 - parallele for KNN

Issue - State: closed - Opened by hejing3283 over 5 years ago - 3 comments

#6 - Heatmap save to file output blank file

Issue - State: closed - Opened by hejing3283 over 5 years ago - 13 comments

#5 - DeepTCR_WF object has no attribute 'Y'

Issue - State: closed - Opened by hejing3283 over 5 years ago - 10 comments

#4 - Supervised learning train error: need at least one array to concatenate

Issue - State: closed - Opened by hejing3283 over 5 years ago - 12 comments
Labels: bug

#3 - VAE AUC violin plot Y-axis value >1

Issue - State: closed - Opened by hejing3283 over 5 years ago - 3 comments
Labels: question

#2 - supervised learning example 2 error

Issue - State: closed - Opened by hejing3283 over 5 years ago - 12 comments
Labels: bug

#1 - Clustering by phenograph error

Issue - State: closed - Opened by hejing3283 over 5 years ago - 2 comments
Labels: bug

GitHub / sidhomj/DeepTCR issues and pull requests