Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / sibis-platform/sibispy issues and pull requests

#99 - Feature/non imaging cumulative files

Pull Request - State: open - Opened by jodahoney 2 months ago - 1 comment

#97 - Bug/config path update

Pull Request - State: closed - Opened by jodahoney 6 months ago

#96 - added ignoring of excluded visits/subjects in export measures check for ncanda

Pull Request - State: closed - Opened by jodahoney 8 months ago - 6 comments

#95 - Feature/export log check

Pull Request - State: closed - Opened by jodahoney 9 months ago

#94 - Added update to export measures log to demographics export

Pull Request - State: closed - Opened by jodahoney 10 months ago

#93 - Add locking/unlocking by site functionality

Pull Request - State: closed - Opened by jodahoney 11 months ago

#92 - Added mass move/copy of non-consented visits

Pull Request - State: closed - Opened by jodahoney 11 months ago

#91 - Removed args dependency, added rm flag

Pull Request - State: closed - Opened by jodahoney 11 months ago

#89 - Undid temp limitation to upload2ndar

Pull Request - State: closed - Opened by jodahoney 11 months ago

#88 - Temp change to move to upload2dndar

Pull Request - State: closed - Opened by jodahoney 11 months ago

#87 - Updated so compatible with legacy data upload

Pull Request - State: closed - Opened by jodahoney 11 months ago

#84 - Added default values to image orientation depending on scan type

Pull Request - State: closed - Opened by jodahoney about 1 year ago

#83 - Hivalc and Ncanda upload processed fully functioning

Pull Request - State: closed - Opened by jodahoney about 1 year ago

#82 - Update to ndar upload

Pull Request - State: closed - Opened by jodahoney about 1 year ago

#81 - Hivalc NDAR Upload Steps Complete and Mappings Abstracted

Pull Request - State: closed - Opened by jodahoney about 1 year ago - 1 comment

#80 - Ndar upload steps moved to sibispy

Pull Request - State: closed - Opened by jodahoney over 1 year ago

#79 - Bug/redcap_address_other_arms

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago

#78 - Added function to make formattable url

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago - 6 comments

#77 - exec_redcap_locking_data forms.py improvements

Issue - State: open - Opened by gcyoung1 over 2 years ago

#76 - Adding slog call for duplicate variables

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago - 6 comments

#75 - Adding logic for existing columns

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago - 6 comments

#74 - Feature/xnat link util

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago - 1 comment

#73 - Add ability to override hard coded dirs like `cases`

Pull Request - State: closed - Opened by jimklo over 2 years ago - 5 comments

#72 - Bug/kill selenium process

Pull Request - State: closed - Opened by gcyoung1 over 2 years ago

#71 - Append to log file and not truncate

Pull Request - State: closed - Opened by vishalmohanty over 2 years ago

#70 - Add current datetime in info log in schedule_job

Pull Request - State: closed - Opened by muachilin over 2 years ago

#69 - Add return job id in schedule_job

Pull Request - State: closed - Opened by muachilin almost 3 years ago

#68 - Add return job id in schedule_job

Pull Request - State: closed - Opened by muachilin almost 3 years ago - 2 comments

#67 - Include setup.py

Pull Request - State: closed - Opened by sudeepnarala almost 3 years ago - 4 comments

#66 - Correct issues with midyear report export

Pull Request - State: closed - Opened by shippy over 3 years ago

#65 - Fix bugs from recent environment update

Pull Request - State: closed - Opened by shippy over 3 years ago

#64 - sibis_email To: appears broken in at least some use cases

Issue - State: open - Opened by shippy over 3 years ago - 1 comment

#63 - Fix reference to `e` outside of try/except block

Pull Request - State: closed - Opened by shippy almost 4 years ago

#62 - Return context manager, not open connection for PennCNP

Pull Request - State: closed - Opened by shippy about 4 years ago

#61 - Feature/submit slurm

Pull Request - State: closed - Opened by jimklo about 4 years ago - 1 comment

#60 - Implement a configuration-based exclusion of demographics generation

Pull Request - State: closed - Opened by shippy about 4 years ago - 1 comment

#59 - Only drop demographics rows/columns if they're entirely NA

Pull Request - State: closed - Opened by shippy over 4 years ago

#58 - bulk_mark feature: optionally mark subcompletions

Issue - State: open - Opened by shippy over 4 years ago

#56 - Export family_id as integer or empty, rather than a float

Pull Request - State: closed - Opened by shippy over 4 years ago

#55 - Replace `siblings_id_first_2` with `family_id` for release demographics

Pull Request - State: closed - Opened by shippy over 4 years ago

#54 - expose analysis and import dirs via session object

Pull Request - State: closed - Opened by jimklo over 4 years ago - 1 comment

#53 - Create a CLI helper

Pull Request - State: closed - Opened by shippy over 4 years ago

#52 - Fix subject/event lookup for non-DataFrame errors

Pull Request - State: closed - Opened by shippy over 4 years ago

#51 - Fail gracefully if redcap_event_name cannot be looked up in Redcap error

Pull Request - State: closed - Opened by shippy over 4 years ago - 1 comment

#50 - Differentiate in reporting issues if they are warning or errors

Issue - State: open - Opened by kipohl almost 8 years ago - 1 comment

#49 - replace label 'experiment_site_id' in sibis.logging

Issue - State: open - Opened by kipohl almost 8 years ago - 2 comments

#48 - update issues even if title is the same

Issue - State: open - Opened by kipohl almost 8 years ago

#47 - Github config need not have both old *and* new auth

Pull Request - State: closed - Opened by shippy over 4 years ago

#46 - Pass sibislogger directly to compute_scores functions

Pull Request - State: closed - Opened by shippy over 4 years ago

#45 - session.redcap_export_records fails for locked empty fields

Issue - State: closed - Opened by shippy over 4 years ago - 1 comment

#44 - Update github api to support Personal Access Tokens

Pull Request - State: closed - Opened by jimklo over 4 years ago - 1 comment
Labels: bug, review-ready

#43 - Session.__connect_penncnp__ should kill orphaned displays automatically

Issue - State: open - Opened by shippy over 4 years ago - 3 comments
Labels: enhancement

#42 - Pass slog to compute_scores

Issue - State: closed - Opened by shippy almost 5 years ago

#41 - sibislogger feature - for "warnings", don't reopen Github issue

Issue - State: open - Opened by shippy almost 5 years ago - 2 comments
Labels: enhancement

#40 - should be an minor bug fix to prevent pyyaml warning

Pull Request - State: closed - Opened by jimklo almost 5 years ago - 1 comment

#39 - Generalize some demographics capabilities when computing summary scores

Pull Request - State: closed - Opened by jimklo almost 5 years ago

#38 - Allow injection of non-NCANDA API types

Pull Request - State: closed - Opened by shippy almost 5 years ago - 4 comments

#37 - Session class hard-codes available API types

Issue - State: closed - Opened by shippy about 5 years ago - 4 comments

#36 - Introduce a generic bulk-marking logic + its specialization on form status

Pull Request - State: closed - Opened by shippy over 5 years ago - 4 comments
Labels: review-ready

#35 - upgrades to support xnat 1.7

Pull Request - State: closed - Opened by jimklo over 5 years ago

#33 - Fix last occurrence of Redcap version-dependent FEM key

Pull Request - State: closed - Opened by shippy over 5 years ago

#31 - Feature: Mass-update Import DAG based on Entry DAG

Issue - State: open - Opened by shippy over 5 years ago - 1 comment

#30 - disable verbose downloads from xnat

Pull Request - State: closed - Opened by jimklo over 5 years ago

#29 - add python 3 compatibility

Pull Request - State: closed - Opened by jimklo over 5 years ago - 1 comment

#28 - [port-svn] Migrate from native pysvn to portable svn

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 1 comment

#27 - Adding a simple pytest and some configuration.

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 4 comments
Labels: review-ready

#26 - Fix an issue where json.dumps isn't handling callable values in dict

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 3 comments

#25 - Add CLI option to compare against "model" output files to detect changes

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 2 comments

#24 - add option to upload scores to redcap from test script

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 1 comment

#23 - Fix nargs + other multiple-arg cases for Redcap form locking

Pull Request - State: closed - Opened by shippy almost 6 years ago

#22 - ncanda-operations calculations have changed precision

Issue - State: open - Opened by shippy almost 6 years ago - 16 comments

#21 - not all files in ncanda-data-integration are compatible with new pandas version

Issue - State: closed - Opened by kipohl almost 6 years ago - 5 comments

#20 - fix deprecation warnings for pandas 0.23.4

Pull Request - State: closed - Opened by jimklo almost 6 years ago - 2 comments

#18 - Only include DTI deviations > 0.06 among errors

Pull Request - State: closed - Opened by shippy about 6 years ago - 2 comments

#17 - Session methods shouldn't fail if log is not initialized

Issue - State: open - Opened by shippy about 6 years ago

#16 - exec_redcap_locking_data --unlock cannot handle multiple forms

Issue - State: closed - Opened by shippy over 6 years ago - 1 comment
Labels: enhancement

#15 - get_mysql_table_records() got an unexpected keyword argument 'form_name'

Issue - State: closed - Opened by shippy over 6 years ago - 1 comment
Labels: bug

#14 - Draft link generation logic for Redcap, XNAT

Pull Request - State: closed - Opened by shippy over 6 years ago - 5 comments
Labels: work-in-progress

#13 - Port to Python 3

Issue - State: closed - Opened by shippy over 6 years ago - 1 comment

#12 - Use pipenv

Issue - State: closed - Opened by shippy over 6 years ago - 1 comment

#11 - post_issues_to_github: parse JSON sublists

Issue - State: open - Opened by shippy over 6 years ago

#10 - Create standard Python package structure

Issue - State: open - Opened by shippy over 6 years ago

#9 - Switch from pysvn to svn?

Issue - State: closed - Opened by shippy over 6 years ago - 5 comments

#8 - Sibis storage branch

Pull Request - State: closed - Opened by sbenito over 7 years ago - 3 comments

#7 - New file function to override redcap.Project().import_records

Pull Request - State: closed - Opened by sbenito almost 8 years ago - 3 comments

#6 - Integrate GitHub Issue Reporting

Pull Request - State: closed - Opened by nicholsn over 8 years ago

#5 - doc: rtd config

Pull Request - State: closed - Opened by nicholsn over 8 years ago

#4 - Adding autodocs

Pull Request - State: closed - Opened by nicholsn over 8 years ago

#3 - Add Docs

Pull Request - State: closed - Opened by nicholsn over 8 years ago

#2 - Small updates

Pull Request - State: closed - Opened by nicholsn over 8 years ago

#1 - add: package data

Pull Request - State: closed - Opened by nicholsn over 8 years ago