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GitHub / shz9/magenpy issues and pull requests

#16 - issues about LD matrices

Issue - State: closed - Opened by biostatShao 6 months ago - 2 comments

#15 - Error computing windowed LD on a plink bfile

Issue - State: closed - Opened by nlapier2 6 months ago - 2 comments

#14 - Package is slow to import

Issue - State: open - Opened by shz9 8 months ago
Labels: good first issue

#13 - Implement heritability estimators

Issue - State: open - Opened by shz9 over 2 years ago
Labels: enhancement

#12 - Explore using `bed-reader` as a backend

Issue - State: open - Opened by shz9 over 2 years ago
Labels: enhancement

#11 - Modify `LDMatrix` to allow for reordering/sorting LD matrices

Issue - State: closed - Opened by shz9 over 2 years ago - 1 comment

#10 - Add LD matrices to S3/Google Cloud storage services

Issue - State: closed - Opened by shz9 over 2 years ago - 4 comments
Labels: enhancement

#9 - Check for and find nearest PSD LD matrix

Issue - State: open - Opened by shz9 over 2 years ago - 1 comment

#8 - Bump numpy from 1.20.2 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#7 - Replace LD matrix matching logic

Issue - State: closed - Opened by shz9 about 3 years ago - 1 comment

#6 - Incorporate Annotations to GWASDataLoader

Pull Request - State: closed - Opened by dorukcakmakci about 3 years ago

#5 - Make LD matrices triangular

Issue - State: closed - Opened by shz9 about 3 years ago - 1 comment

#4 - Add GDLMerger class

Issue - State: closed - Opened by shz9 over 3 years ago - 1 comment
Labels: enhancement

#3 - Re-organize the code for modularity

Issue - State: closed - Opened by shz9 over 3 years ago - 2 comments

#2 - Add AnnotatedPhenotypeSimulator

Issue - State: open - Opened by shz9 over 3 years ago
Labels: enhancement

#1 - Add support for reading summary statistics

Issue - State: closed - Opened by shz9 over 4 years ago
Labels: enhancement