Ecosyste.ms: Issues

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GitHub / shishenyxx/DeepMosaic issues and pull requests

#35 - Condition for "extra_mosaic_filters"

Issue - State: closed - Opened by duct317 8 months ago - 2 comments
Labels: bug

#34 - Effect of adapters on the final calling

Issue - State: open - Opened by ChenAugustin 10 months ago - 3 comments
Labels: question

#33 - too many PASS for 30X WGS

Issue - State: open - Opened by huangyuanf 11 months ago - 1 comment
Labels: question

#32 - Update README.md

Pull Request - State: closed - Opened by shishenyxx 12 months ago

#31 - Indel predictions

Issue - State: closed - Opened by RP-Bioinfo about 1 year ago - 1 comment

#30 - Too many mutect2 variants

Issue - State: closed - Opened by gevro about 1 year ago - 10 comments
Labels: question

#29 - How to run DeepMosaic with nanopore WGS data?

Issue - State: closed - Opened by ymcki about 1 year ago - 3 comments
Labels: question

#28 - Large number of output files

Issue - State: closed - Opened by gevro about 1 year ago - 3 comments
Labels: question

#27 - homopolymer and dinucluotide filter

Issue - State: closed - Opened by huangyuanf about 1 year ago - 1 comment
Labels: question

#26 - Code refactoring

Pull Request - State: open - Opened by tosemml about 1 year ago - 1 comment

#25 - Very high number of mosaic predictions

Issue - State: closed - Opened by gevro about 1 year ago - 8 comments
Labels: question

#24 - Multi-threaded support

Issue - State: closed - Opened by gevro about 1 year ago - 2 comments
Labels: question

#23 - Run errors

Issue - State: closed - Opened by gevro about 1 year ago - 2 comments
Labels: question

#22 - Error in downloading new 1.1.1 singularity container

Issue - State: closed - Opened by gevro over 1 year ago - 2 comments
Labels: question

#21 - deepmosaic-draw: error: unrecognized arguments: -db gnomad_genome

Issue - State: closed - Opened by gevro over 1 year ago - 7 comments
Labels: question

#20 - CRAM input

Issue - State: open - Opened by gevro over 1 year ago - 1 comment
Labels: enhancement

#19 - Using DeepMosaic for diploid plants

Issue - State: closed - Opened by H-wong017 over 1 year ago - 6 comments
Labels: enhancement

#18 - Developement

Pull Request - State: closed - Opened by arzoopatel5 over 1 year ago

#18 - Developement

Pull Request - State: closed - Opened by arzoopatel5 over 1 year ago

#17 - different gnomad databases?

Issue - State: closed - Opened by apaul7 over 1 year ago - 1 comment
Labels: enhancement

#16 - Developement

Pull Request - State: closed - Opened by arzoopatel5 over 1 year ago

#15 - torch

Issue - State: closed - Opened by qwertyuichi over 1 year ago - 1 comment

#14 - v1.0.2 update

Pull Request - State: closed - Opened by arzoopatel5 over 1 year ago

#13 - A little issue in canvasPainter.py

Issue - State: closed - Opened by Lidweixiang over 1 year ago - 1 comment
Labels: enhancement

#12 - How DeepMosaic use population information in training

Issue - State: closed - Opened by hiyoothere over 1 year ago - 1 comment
Labels: question

#11 - Errors at multiprocessing and matplotlib

Issue - State: closed - Opened by hyunyong-koh over 1 year ago - 3 comments
Labels: bug

#10 - Questions about sample.vcf in step1

Issue - State: closed - Opened by WZo0o over 1 year ago - 6 comments
Labels: documentation

#9 - high maf and score3 simultaneously?

Issue - State: closed - Opened by kunalkathuria almost 2 years ago - 2 comments
Labels: question

#8 - speed up step 1?

Issue - State: closed - Opened by kunalkathuria almost 2 years ago - 2 comments
Labels: question

#7 - If input VCFs are splitted by chromosomes, should input BAM files also be splitted by chromosomes too?

Issue - State: closed - Opened by ehojune almost 2 years ago - 1 comment
Labels: question

#6 - mac?

Issue - State: closed - Opened by proukakis almost 2 years ago - 2 comments
Labels: question

#5 - DeepMosaic performance at 30x depth?

Issue - State: closed - Opened by changhan1110 almost 2 years ago - 4 comments
Labels: question

#4 - running DeepMosaic with hg38

Issue - State: closed - Opened by tgambin almost 2 years ago - 3 comments
Labels: enhancement

#3 - About SimData

Issue - State: closed - Opened by songbowang125 almost 2 years ago - 5 comments
Labels: documentation

#2 - Recommendations for calling candidate variants

Issue - State: closed - Opened by wdecoster almost 4 years ago - 8 comments
Labels: documentation

#1 - How does DeepMosaic perform on PCR-amplified WES data?

Issue - State: closed - Opened by sattarkh almost 4 years ago - 7 comments
Labels: documentation