Ecosyste.ms: Issues

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GitHub / shenwei356/kmcp issues and pull requests

#27 - long read metagenomic profiling

Issue - State: open - Opened by JensUweUlrich almost 2 years ago - 1 comment

#26 - Dealing with novel/non-sequenced species

Issue - State: closed - Opened by mverce almost 2 years ago - 2 comments

#25 - KMCP database building tutorial

Issue - State: open - Opened by Cryphonectria almost 2 years ago - 3 comments

#24 - CowTransfer link doesn't work

Issue - State: closed - Opened by jamelee about 2 years ago - 3 comments

#23 - kmcp search is very slow for metatranscriptome data

Issue - State: closed - Opened by shenwei356 about 2 years ago - 6 comments

#22 - Profiling output table interpretation

Issue - State: closed - Opened by lborcard over 2 years ago - 3 comments

#21 - Estimating abundance using EM algorithm

Pull Request - State: closed - Opened by shenwei356 over 2 years ago

#20 - reporting proportion of unmatched reads

Issue - State: closed - Opened by peterbjarke over 2 years ago - 3 comments
Labels: enhancement

#19 - 0.8.3: Fails on i386: 1 << 32 - 1 (untyped int constant 4294967295) overflows int

Issue - State: closed - Opened by yurivict over 2 years ago - 4 comments

#18 - Create an index without create the database

Issue - State: closed - Opened by davidmaimoun over 2 years ago - 4 comments

#17 - compiling/installing from source

Issue - State: closed - Opened by jianshu93 over 2 years ago - 9 comments

#16 - Error when installing KMCP

Issue - State: closed - Opened by davidmaimoun over 2 years ago - 9 comments

#15 - QUESTION: Taxdump

Issue - State: closed - Opened by alienzj over 2 years ago - 2 comments
Labels: question

#14 - QUESTION: KMCP merge

Issue - State: closed - Opened by alienzj over 2 years ago - 4 comments

#12 - Building database with MAGs

Issue - State: closed - Opened by durrantmm almost 3 years ago - 2 comments

#11 - TODO: support viral genomes collections, e.g, MGV, GPD

Issue - State: closed - Opened by shenwei356 almost 3 years ago - 3 comments
Labels: enhancement

#10 - kmcp search crashed

Issue - State: closed - Opened by zhanxw almost 3 years ago - 5 comments
Labels: bug

#9 - [website] broken links

Issue - State: closed - Opened by telatin almost 3 years ago - 1 comment

#8 - A minor issue on console messages

Issue - State: closed - Opened by zhanxw almost 3 years ago - 3 comments

#6 - TODO: improve search results parsing by using a simplified version of strconv.ParseFloat

Issue - State: closed - Opened by shenwei356 almost 3 years ago - 1 comment
Labels: enhancement

#5 - TODO: allow changing parts of the parameters for preset profiling modes

Issue - State: closed - Opened by shenwei356 almost 3 years ago
Labels: enhancement

#4 - Metaphlan format profile report file seems to lack NCBI taxonomy IDs.

Issue - State: closed - Opened by ilnamkang about 3 years ago - 3 comments

#3 - Read-level output format

Issue - State: closed - Opened by sjaenick about 3 years ago - 1 comment

#2 - support multiple sizes of k-mer

Pull Request - State: closed - Opened by shenwei356 almost 4 years ago

#1 - Support multiple set membership testing (MSMT) from RAMBO

Pull Request - State: closed - Opened by shenwei356 about 4 years ago