shbrief/OmicsMLRepoR issues and pull requests

#40 - adding ontoSummarize

Pull Request - State: open - Opened by krlong68 3 months ago - 2 comments

#39 - Consolidate table reshaping functions

Issue - State: open - Opened by shbrief 3 months ago
Labels: enhancement

#38 - Include `_ontology_term_id` columns during table manipulation

Issue - State: open - Opened by shbrief 4 months ago
Labels: enhancement

#37 - Handling warning message from functions in data reshaping functions

Issue - State: open - Opened by shbrief 4 months ago
Labels: documentation

#36 - update vignette to include for loop option

Pull Request - State: closed - Opened by krlong68 6 months ago

#35 - update vignette to start from curated metadata

Pull Request - State: closed - Opened by krlong68 6 months ago

#34 - adding vignette on sample-specific cBioPortalData download

Pull Request - State: closed - Opened by krlong68 6 months ago

#33 - Consider storing data in zenodo rather than cloud storage

Issue - State: closed - Opened by seandavi 7 months ago - 1 comment

#32 - Potential headers for the vignette

Issue - State: open - Opened by shbrief 7 months ago
Labels: documentation

#31 - Beta

Pull Request - State: closed - Opened by shbrief 7 months ago

#30 - Feature onto filter

Pull Request - State: closed - Opened by krlong68 7 months ago

#29 - updated functions

Pull Request - State: closed - Opened by shbrief 7 months ago

#28 - Feature onto filter

Pull Request - State: closed - Opened by krlong68 8 months ago

#27 - Expansion of `tree_filter` function to accept conditional expressions

Issue - State: closed - Opened by shbrief 8 months ago - 1 comment
Labels: enhancement, help wanted

#26 - Possible bug causing bfc to not update as expected.

Issue - State: open - Opened by seandavi 8 months ago - 1 comment

#25 - ontoFilter functions and comparison .qmd

Pull Request - State: closed - Opened by krlong68 8 months ago

#24 - Include ancestor file for cBioPortal

Issue - State: open - Opened by shbrief 8 months ago

#23 - adding similarTerms.R

Pull Request - State: closed - Opened by krlong68 10 months ago

#22 - Error in the `getMetadata` function (BFC issue?)

Issue - State: closed - Opened by shbrief 11 months ago - 2 comments
Labels: help wanted

#21 - Make `getMetadata` function to recognize the different versions of metadata

Issue - State: closed - Opened by shbrief 11 months ago - 1 comment
Labels: bug

#20 - Make the `ontoTraverse` function run faster

Issue - State: open - Opened by shbrief 11 months ago

#19 - fixed argument usage in merge_vectors

Pull Request - State: closed - Opened by krlong68 11 months ago

#18 - Feature top nodes

Pull Request - State: closed - Opened by krlong68 12 months ago

#17 - Note the `exact` argument for the `getOntoInfo`function

Issue - State: open - Opened by shbrief 12 months ago

#16 - Reasoning for this part

Issue - State: closed - Opened by shbrief 12 months ago - 1 comment

#15 - Feature searchMetadata

Pull Request - State: closed - Opened by krlong68 12 months ago

#14 - Feature top nodes

Pull Request - State: closed - Opened by krlong68 about 1 year ago

#13 - update import statement

Pull Request - State: closed - Opened by krlong68 about 1 year ago

#12 - Error from `commonNodes` function

Issue - State: closed - Opened by shbrief about 1 year ago

#11 - added covered node names

Pull Request - State: closed - Opened by krlong68 about 1 year ago