Ecosyste.ms: Issues

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GitHub / shao-lab/MAnorm issues and pull requests

#24 - Job running for ever on cluster

Issue - State: closed - Opened by YannVRB about 3 years ago - 1 comment

#23 - Is it appropriate for ATAC-seq data?

Issue - State: closed - Opened by yx-xu about 3 years ago - 1 comment

#22 - issue with down regulated peaks

Issue - State: open - Opened by AntonioAhn about 4 years ago

#21 - Spike-in normalisation

Issue - State: open - Opened by Rseq about 4 years ago

#20 - Question regarding window size

Issue - State: closed - Opened by AntonioAhn about 4 years ago - 4 comments

#19 - MAnorm 1.3

Issue - State: closed - Opened by AntonioAhn over 4 years ago - 7 comments

#18 - Different results with different input type but same macs2 peak calls

Issue - State: closed - Opened by dsytan over 4 years ago - 5 comments

#17 - index error

Issue - State: closed - Opened by yysheep2020 over 4 years ago - 2 comments

#16 - Broad peak format is not supported

Issue - State: closed - Opened by michael-kotliar almost 5 years ago - 1 comment

#15 - Error when loading MACS2 output with broad peaks called

Issue - State: closed - Opened by michael-kotliar almost 5 years ago - 1 comment

#14 - Value error: Invlaid literal

Issue - State: closed - Opened by ishtiaqueh almost 5 years ago - 1 comment

#13 - The influence of read number on MAnorm result.

Issue - State: closed - Opened by a091601 about 5 years ago - 1 comment

#12 - Difference between MAnorm and MAnorm2

Issue - State: closed - Opened by ckntav about 5 years ago - 4 comments

#11 - Inconsistent numbers of differential binding sites

Issue - State: closed - Opened by ckntav about 5 years ago - 6 comments

#10 - where can I get v1.2.0?

Issue - State: closed - Opened by xiaonian92 over 5 years ago - 1 comment

#9 - update to v1.1.4

Pull Request - State: closed - Opened by hongduosun over 6 years ago

#8 - update to v1.1.4

Pull Request - State: closed - Opened by hongduosun over 6 years ago

#7 - No Figure output

Issue - State: closed - Opened by crg-eilslabs over 6 years ago - 2 comments

#6 - Macs2 format

Issue - State: closed - Opened by liehu232 over 6 years ago - 2 comments
Labels: enhancement

#5 - IndexError: list index out of range

Issue - State: closed - Opened by Yippee0 over 6 years ago - 3 comments

#4 - Heatmap output. [Feature request]

Issue - State: closed - Opened by AlicePsyche over 6 years ago - 3 comments
Labels: enhancement

#3 - Calling Differential peaks consistent between biological replicates

Issue - State: closed - Opened by chiefcat almost 7 years ago - 3 comments

#2 - 0 peaks are loaded

Issue - State: closed - Opened by chiefcat almost 7 years ago - 2 comments

#1 - questions about read file

Issue - State: closed - Opened by gaoyishu almost 7 years ago - 4 comments