sgosline/mpnstxenomodeling issues and pull requests

#64 - add in proteomics analysis

Pull Request - State: closed - Opened by sgosline almost 2 years ago

#64 - add in proteomics analysis

Pull Request - State: closed - Opened by sgosline almost 2 years ago

#63 - Fix code

Pull Request - State: closed - Opened by sgosline about 2 years ago - 1 comment

#63 - Fix code

Pull Request - State: closed - Opened by sgosline about 2 years ago - 1 comment

#62 - Fix code

Pull Request - State: closed - Opened by sgosline over 2 years ago

#62 - Fix code

Pull Request - State: closed - Opened by sgosline over 2 years ago

#61 - slight bug fix

Pull Request - State: closed - Opened by sgosline over 2 years ago

#61 - slight bug fix

Pull Request - State: closed - Opened by sgosline over 2 years ago

#60 - Fix code

Pull Request - State: closed - Opened by sgosline over 2 years ago

#60 - Fix code

Pull Request - State: closed - Opened by sgosline over 2 years ago

#59 - updated GO enrichment parameters

Pull Request - State: closed - Opened by sgosline over 2 years ago

#59 - updated GO enrichment parameters

Pull Request - State: closed - Opened by sgosline over 2 years ago

#58 - adding prc2 status

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#58 - adding prc2 status

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#57 - found a bug in the python loading

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#57 - found a bug in the python loading

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#56 - Code cleanup and addition of enrichment compression

Pull Request - State: closed - Opened by JamesPino almost 3 years ago - 2 comments

#56 - Code cleanup and addition of enrichment compression

Pull Request - State: closed - Opened by JamesPino almost 3 years ago - 2 comments

#55 - Incucyte plotting and summary stats analysis

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#55 - Incucyte plotting and summary stats analysis

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#54 - Use of upload to synapse within package

Issue - State: open - Opened by JamesPino almost 3 years ago - 3 comments

#54 - Use of upload to synapse within package

Issue - State: open - Opened by JamesPino almost 3 years ago - 3 comments

#53 - Reformatting package side of code

Issue - State: closed - Opened by JamesPino almost 3 years ago - 2 comments

#53 - Reformatting package side of code

Issue - State: closed - Opened by JamesPino almost 3 years ago - 2 comments

#52 - Updated MT analysis plots

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#52 - Updated MT analysis plots

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#51 - updated code to load only data necessary

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#51 - updated code to load only data necessary

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#50 - Minor updates to fig1 and linting

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#50 - Minor updates to fig1 and linting

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#49 - New drug response

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#49 - New drug response

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#48 - Adds parsing of AD/t_depth in somatic mutation files

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#48 - Adds parsing of AD/t_depth in somatic mutation files

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#47 - Release

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#47 - Release

Pull Request - State: closed - Opened by jessbade almost 3 years ago

#46 - slight update

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#46 - slight update

Pull Request - State: closed - Opened by sgosline almost 3 years ago

#45 - fixing up formatting errors

Pull Request - State: closed - Opened by sgosline about 3 years ago

#45 - fixing up formatting errors

Pull Request - State: closed - Opened by sgosline about 3 years ago

#44 - Create new MT stats with controls

Issue - State: closed - Opened by sgosline about 3 years ago - 1 comment

#44 - Create new MT stats with controls

Issue - State: closed - Opened by sgosline about 3 years ago - 1 comment

#43 - minor change to build

Pull Request - State: closed - Opened by sgosline about 3 years ago

#43 - minor change to build

Pull Request - State: closed - Opened by sgosline about 3 years ago

#42 - Cannot update MT drug stats

Issue - State: closed - Opened by sgosline about 3 years ago

#42 - Cannot update MT drug stats

Issue - State: closed - Opened by sgosline about 3 years ago

#41 - added new changes to gene enrichment

Pull Request - State: closed - Opened by sgosline about 3 years ago

#41 - added new changes to gene enrichment

Pull Request - State: closed - Opened by sgosline about 3 years ago

#40 - moved files that generate table to separate directory

Pull Request - State: closed - Opened by sgosline about 3 years ago

#40 - moved files that generate table to separate directory

Pull Request - State: closed - Opened by sgosline about 3 years ago

#39 - Use AUCs to determine synergy, do differential expression on MT

Issue - State: closed - Opened by sgosline about 3 years ago - 1 comment

#39 - Use AUCs to determine synergy, do differential expression on MT

Issue - State: closed - Opened by sgosline about 3 years ago - 1 comment

#38 - Created new MT data function and also new plotting

Pull Request - State: closed - Opened by sgosline about 3 years ago

#38 - Created new MT data function and also new plotting

Pull Request - State: closed - Opened by sgosline about 3 years ago

#37 - Mutation plotting by clinical vars

Pull Request - State: closed - Opened by jessbade about 3 years ago

#37 - Mutation plotting by clinical vars

Pull Request - State: closed - Opened by jessbade about 3 years ago

#36 - Got all figures to render!

Pull Request - State: closed - Opened by sgosline about 3 years ago

#36 - Got all figures to render!

Pull Request - State: closed - Opened by sgosline about 3 years ago

#35 - More figure updates

Pull Request - State: closed - Opened by sgosline about 3 years ago

#35 - More figure updates

Pull Request - State: closed - Opened by sgosline about 3 years ago

#34 - Add in differential expression to somatic -expression MD

Issue - State: closed - Opened by sgosline about 3 years ago

#34 - Add in differential expression to somatic -expression MD

Issue - State: closed - Opened by sgosline about 3 years ago

#33 - updated to improve somatic calls

Pull Request - State: closed - Opened by sgosline about 3 years ago

#33 - updated to improve somatic calls

Pull Request - State: closed - Opened by sgosline about 3 years ago

#32 - Added new Rmds that describe figures to generate

Pull Request - State: closed - Opened by sgosline about 3 years ago

#32 - Added new Rmds that describe figures to generate

Pull Request - State: closed - Opened by sgosline about 3 years ago

#31 - updated differential expresson

Pull Request - State: closed - Opened by sgosline about 3 years ago - 1 comment

#31 - updated differential expresson

Pull Request - State: closed - Opened by sgosline about 3 years ago - 1 comment

#30 - Create report describing correlation of two model systems

Issue - State: closed - Opened by sgosline about 3 years ago

#30 - Create report describing correlation of two model systems

Issue - State: closed - Opened by sgosline about 3 years ago

#29 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago - 1 comment

#29 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago - 1 comment

#28 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#28 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#27 - continuing to update

Pull Request - State: closed - Opened by sgosline over 3 years ago

#27 - continuing to update

Pull Request - State: closed - Opened by sgosline over 3 years ago

#26 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#26 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#25 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#25 - Corr eval

Pull Request - State: closed - Opened by sgosline over 3 years ago

#24 - Add rmd test

Pull Request - State: closed - Opened by sgosline over 3 years ago

#24 - Add rmd test

Pull Request - State: closed - Opened by sgosline over 3 years ago

#23 - Micro tissue drug data analysis

Pull Request - State: closed - Opened by jessbade over 3 years ago

#23 - Micro tissue drug data analysis

Pull Request - State: closed - Opened by jessbade over 3 years ago

#22 - Fixes #14

Pull Request - State: closed - Opened by jessbade over 3 years ago

#22 - Fixes #14

Pull Request - State: closed - Opened by jessbade over 3 years ago

#21 - Solves #19

Pull Request - State: closed - Opened by jessbade over 3 years ago

#21 - Solves #19

Pull Request - State: closed - Opened by jessbade over 3 years ago

#20 - Removed Renv Dependencies!!!

Pull Request - State: closed - Opened by sgosline over 3 years ago

#20 - Removed Renv Dependencies!!!

Pull Request - State: closed - Opened by sgosline over 3 years ago

#19 - compare differential expression between updated mt samples

Issue - State: closed - Opened by sgosline over 3 years ago

#19 - compare differential expression between updated mt samples

Issue - State: closed - Opened by sgosline over 3 years ago

#18 - moved things around

Pull Request - State: closed - Opened by sgosline over 3 years ago

#18 - moved things around

Pull Request - State: closed - Opened by sgosline over 3 years ago

#17 - made upper case

Pull Request - State: closed - Opened by sgosline over 3 years ago

#17 - made upper case

Pull Request - State: closed - Opened by sgosline over 3 years ago

#16 - package updates

Pull Request - State: closed - Opened by sgosline over 3 years ago

#16 - package updates

Pull Request - State: closed - Opened by sgosline over 3 years ago

#15 - Tests are failing due to inability to build

Issue - State: closed - Opened by sgosline over 3 years ago - 1 comment

#15 - Tests are failing due to inability to build

Issue - State: closed - Opened by sgosline over 3 years ago - 1 comment

GitHub / sgosline/mpnstxenomodeling issues and pull requests