seung-lab/MaterializationEngine issues and pull requests

#128 - add boolean for getting all versions

Pull Request - State: closed - Opened by fcollman 12 months ago

#127 - Add unique value endpoint

Pull Request - State: closed - Opened by fcollman 12 months ago

#126 - adding regex_dict options

Pull Request - State: closed - Opened by fcollman about 1 year ago

#125 - Fix bad root ids

Pull Request - State: closed - Opened by dlbrittain about 1 year ago

#124 - Better error handling

Pull Request - State: closed - Opened by fcollman about 1 year ago

#123 - Random sample option for queries

Pull Request - State: closed - Opened by fcollman about 1 year ago

#122 - feat: add basic redis and celery connection checks

Pull Request - State: closed - Opened by dlbrittain about 1 year ago

#121 - Pyarrow serialize

Pull Request - State: closed - Opened by fcollman about 1 year ago

#120 - Spatial aligned svid lookup

Pull Request - State: open - Opened by dlbrittain about 1 year ago

#119 - adding option to trigger update for large tables

Pull Request - State: open - Opened by fcollman over 1 year ago

#118 - Allow invalid livelive roots

Pull Request - State: closed - Opened by fcollman over 1 year ago

#117 - Allow invalid livelive roots

Pull Request - State: closed - Opened by fcollman over 1 year ago

#116 - fix: attempt to handle redis disconnects

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#115 - fix: remove bind from task

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#114 - fix: public dataset views

Pull Request - State: closed - Opened by fcollman over 1 year ago

#113 - View schemas

Pull Request - State: closed - Opened by fcollman over 1 year ago

#112 - fix: fix live live when mapping is 1-1 across time

Pull Request - State: closed - Opened by fcollman over 1 year ago

#111 - adding new all metadata endpoint

Pull Request - State: closed - Opened by fcollman over 1 year ago

#110 - adding rate limiter

Pull Request - State: closed - Opened by fcollman over 1 year ago

#109 - feat: pass connection number param

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#108 - removing auto version

Pull Request - State: closed - Opened by fcollman over 1 year ago

#107 - Filter split tables

Pull Request - State: closed - Opened by dlbrittain over 1 year ago - 2 comments

#106 - Filter out non-valid rows for split materializations via timestamp/valid values

Issue - State: open - Opened by dlbrittain over 1 year ago

#105 - feat: delete non-expired non-valid dbs

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#104 - fixing empty query result

Pull Request - State: closed - Opened by fcollman over 1 year ago

#103 - feat: add lookup all root ids workflow

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#102 - fix: set tables to valid when not merging

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#101 - Materialization fixes datastack counting

Pull Request - State: closed - Opened by fcollman over 1 year ago - 1 comment

#100 - adding view endpoints

Pull Request - State: closed - Opened by fcollman over 1 year ago

#99 - feat: extract version status

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#98 - Workflow fixes

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#97 - fix: updating table owner warning

Pull Request - State: closed - Opened by fcollman over 1 year ago

#96 - test: using new dadb fix

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#95 - fix: make create_new_version call explicit

Pull Request - State: closed - Opened by fcollman over 1 year ago

#94 - Fix live live join

Pull Request - State: closed - Opened by fcollman over 1 year ago

#93 - Cleanup

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#92 - Better svid lookup

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#91 - Split api

Pull Request - State: closed - Opened by fcollman over 1 year ago

#90 - Only supported datastacks

Pull Request - State: closed - Opened by fcollman over 1 year ago

#89 - make it only support certain datastacks

Pull Request - State: closed - Opened by fcollman over 1 year ago

#88 - V3 api

Pull Request - State: closed - Opened by fcollman over 1 year ago

#87 - fix missing root_ids

Pull Request - State: closed - Opened by fcollman over 1 year ago

#86 - Lookup svid endpoint

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#85 - feat: optional keep 'created' time column

Pull Request - State: open - Opened by dlbrittain almost 2 years ago - 2 comments

#84 - Mat fixes

Pull Request - State: closed - Opened by dlbrittain almost 2 years ago

#83 - Workflow helper api

Pull Request - State: closed - Opened by dlbrittain almost 2 years ago

#82 - bug: new annotation workflow was broken

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#81 - Adding permissions

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#80 - Reset cached models

Pull Request - State: closed - Opened by dlbrittain almost 2 years ago

#79 - Better views

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#78 - feat: add create virtual version endpoint

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#77 - feat: add migration cli

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#76 - Spurious warning for queries with explicit limit < max_limit (ie usually 200,000 rows)

Issue - State: open - Opened by jefferis about 2 years ago

#75 - Filter row counts

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#74 - Mergeless materialization

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#73 - Validate datastack refactor

Pull Request - State: closed - Opened by fcollman about 2 years ago

#72 - Validate datastack decorator

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#71 - Virtual datastack support

Pull Request - State: closed - Opened by dlbrittain about 2 years ago - 3 comments

#70 - Fix ref seg tables

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#69 - feat: filter by time for row count

Pull Request - State: closed - Opened by dlbrittain about 2 years ago

#68 - Index checking can fail

Issue - State: closed - Opened by dlbrittain about 2 years ago

#67 - Row count mismatch

Issue - State: closed - Opened by dlbrittain about 2 years ago

#66 - bumping versions to 4.0

Pull Request - State: closed - Opened by fcollman over 2 years ago

#65 - Use new dynamic annotation db interface

Pull Request - State: closed - Opened by dlbrittain over 2 years ago

#64 - draft of ilike filter

Pull Request - State: open - Opened by fcollman over 2 years ago
Labels: draft

#63 - chore: bump middle auth client

Pull Request - State: closed - Opened by dlbrittain over 2 years ago

#62 - Smarter schedule

Pull Request - State: closed - Opened by fcollman over 2 years ago

#61 - fixing delete logic

Pull Request - State: closed - Opened by fcollman over 2 years ago

#60 - removing logging

Pull Request - State: closed - Opened by fcollman over 2 years ago

#59 - omit underscore on null suffix

Pull Request - State: closed - Opened by ceesem over 2 years ago

#58 - adding new live endpoint

Pull Request - State: closed - Opened by fcollman over 2 years ago

#57 - Better database copy handling

Issue - State: open - Opened by dlbrittain over 2 years ago
Labels: bug, enhancement

#56 - build(deps-dev): bump ipython from 7.25.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#55 - Celery 5

Pull Request - State: closed - Opened by dlbrittain over 2 years ago

#54 - fix(api): errors for invalid tables/ versions

Pull Request - State: closed - Opened by fcollman over 2 years ago

#53 - trying to bump requirements to fix security holes

Pull Request - State: closed - Opened by fcollman almost 3 years ago

#52 - Added counts functionality

Pull Request - State: closed - Opened by sdorkenw almost 3 years ago - 3 comments

#51 - adding docker hub build

Pull Request - State: closed - Opened by fcollman almost 3 years ago

#50 - Reference annotations

Pull Request - State: closed - Opened by dlbrittain almost 3 years ago

#49 - Lookup missing root ids

Pull Request - State: closed - Opened by dlbrittain about 3 years ago

#48 - trying to allow for dashes in table names

Pull Request - State: closed - Opened by fcollman about 3 years ago - 1 comment

#47 - Setup aligned_volume database on startup

Issue - State: open - Opened by dlbrittain about 3 years ago

#46 - Remove expired db fixes

Pull Request - State: closed - Opened by dlbrittain about 3 years ago
Labels: bug

#45 - spatial query fixes

Pull Request - State: closed - Opened by fcollman about 3 years ago

#44 - Spatial query fixes

Pull Request - State: closed - Opened by dlbrittain about 3 years ago

#43 - Spatial querying

Pull Request - State: closed - Opened by dlbrittain about 3 years ago
Labels: enhancement

#42 - Large table svid lookup

Pull Request - State: closed - Opened by dlbrittain over 3 years ago

#41 - chore(deps-dev): bump psutil from 5.4.3 to 5.6.6

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 4 comments
Labels: dependencies

#40 - bumping reqs

Pull Request - State: closed - Opened by fcollman over 3 years ago

#39 - alternative config mechanism

Pull Request - State: closed - Opened by fcollman over 3 years ago

#38 - columns ending in _root_id are not allowed

Issue - State: closed - Opened by fcollman over 3 years ago

#37 - Remove chunkedgraph from dependancies

Pull Request - State: closed - Opened by fcollman over 3 years ago
Labels: dependencies

#36 - lowering min databases and making configurable

Pull Request - State: closed - Opened by fcollman over 3 years ago

#35 - Datastack middle auth client

Pull Request - State: closed - Opened by fcollman over 3 years ago

#34 - bumping reqs and adding metadata to endpoint

Pull Request - State: closed - Opened by fcollman over 3 years ago

#33 - bumping ems req

Pull Request - State: closed - Opened by fcollman over 3 years ago

#32 - adding valid=True flag

Pull Request - State: closed - Opened by fcollman over 3 years ago

#31 - Linting

Pull Request - State: closed - Opened by dlbrittain over 3 years ago

#30 - Use Celery 5.1.0+

Issue - State: closed - Opened by dlbrittain over 3 years ago

#29 - merge annotation table metadata with segmentation metadata

Issue - State: open - Opened by fcollman over 3 years ago - 2 comments

GitHub / seung-lab/MaterializationEngine issues and pull requests