seung-lab/CAVEclient issues and pull requests

#156 - Revert docs url until github actions are set up

Pull Request - State: closed - Opened by bdpedigo 9 months ago

#155 - Pandas 2.2 breaks client.materialize.query_table

Issue - State: open - Opened by ilexaquifolium 9 months ago - 7 comments

#154 - Add bounding box argument to `level2_chunk_graph`

Pull Request - State: closed - Opened by bdpedigo 9 months ago - 1 comment

#153 - Update schemas.rst - list schema function outdated?

Pull Request - State: open - Opened by ktedore 9 months ago

#152 - Fix typo in MaterializationClientV2/V3

Pull Request - State: closed - Opened by bdpedigo 9 months ago

#151 - https://github.com/seung-lab/CAVEclient/pull/152

Issue - State: closed - Opened by bdpedigo 9 months ago

#150 - Propose method and client-level specification of desired units for input/output

Issue - State: open - Opened by bdpedigo 9 months ago - 1 comment

#149 - Annotation uploading is not robust to some types

Issue - State: open - Opened by ceesem 9 months ago - 1 comment

#148 - Propose `get_detailed_change_log`

Issue - State: closed - Opened by bdpedigo 9 months ago

#147 - Rewrite documentation in mkdocs

Pull Request - State: closed - Opened by bdpedigo 10 months ago - 2 comments

#146 - Include 3.10 in build

Pull Request - State: closed - Opened by bdpedigo 10 months ago

#145 - `merge_reference` does nothing in `MaterializationClientV3.query_view`

Issue - State: open - Opened by bdpedigo 10 months ago

#144 - Fix tuple typing spec

Pull Request - State: closed - Opened by bdpedigo 10 months ago

#143 - Developer quality of life improvements

Pull Request - State: closed - Opened by bdpedigo 10 months ago

#142 - Add return type hints to `chunkedgraph`

Pull Request - State: closed - Opened by bdpedigo 10 months ago

#141 - Due to problems with lineage graph, get_latest_roots sometimes includes non-current IDs

Issue - State: open - Opened by ilexaquifolium 10 months ago

#140 - Fix wrong parameter name for `filter_spatial_dict` in `query_table`

Pull Request - State: closed - Opened by bdpedigo 10 months ago

#139 - add table map endpoint and l2 cache check

Pull Request - State: closed - Opened by ceesem 10 months ago

#138 - checks in get_latest_roots that all IDs are current

Pull Request - State: open - Opened by ilexaquifolium 10 months ago - 1 comment

#137 - Querying synapses with bounding box fails

Issue - State: open - Opened by javierhow 11 months ago - 6 comments

#136 - add static url and local save

Pull Request - State: closed - Opened by ceesem 11 months ago

#135 - fixed error message description

Pull Request - State: closed - Opened by fcollman 11 months ago

#134 - Querying like I would do in the `codex.flywire.ai/app/search`?

Issue - State: open - Opened by IanQS 12 months ago

#133 - get_annotation_count throws error for reference tables

Issue - State: open - Opened by schlegelp about 1 year ago

#132 - Fix ngl state encoding

Pull Request - State: closed - Opened by ceesem about 1 year ago

#131 - Bump pyarrow from 11.0.0 to 14.0.1

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#130 - Bump pyarrow from 11.0.0 to 14.0.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#129 - `chunkedgraph` module documentation improvements and standardization

Pull Request - State: closed - Opened by bdpedigo about 1 year ago - 1 comment

#128 - Expired versions flag

Pull Request - State: closed - Opened by fcollman about 1 year ago

#127 - Bump urllib3 from 2.0.4 to 2.0.7 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#126 - Propose adding "details" to `chunkedgraph.get_tabular_change_log()`

Issue - State: closed - Opened by bdpedigo about 1 year ago - 2 comments

#125 - fixes issues with lineage graph filtering with client side filtering

Pull Request - State: closed - Opened by fcollman about 1 year ago

#124 - improve reliability of get_latest_roots

Pull Request - State: closed - Opened by fcollman about 1 year ago

#123 - Fix division by zero

Pull Request - State: closed - Opened by ariematsliah-princeton about 1 year ago - 1 comment

#122 - added unique values endpoint

Pull Request - State: closed - Opened by fcollman about 1 year ago

#121 - Add unit test for `is_valid_nodes`

Pull Request - State: closed - Opened by bdpedigo about 1 year ago

#120 - Error with `chunkedgraph.is_valid_nodes()`

Issue - State: closed - Opened by bdpedigo about 1 year ago

#119 - Bump urllib3 from 2.0.4 to 2.0.6 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#118 - fixing timestamp parsing

Pull Request - State: open - Opened by fcollman about 1 year ago - 1 comment

#117 - added filter regex options

Pull Request - State: closed - Opened by fcollman about 1 year ago

#116 - relax pyarrow version requirements?

Issue - State: open - Opened by jefferis about 1 year ago - 2 comments

#115 - Query arg bug

Pull Request - State: closed - Opened by ceesem over 1 year ago

#114 - Client side serialization

Pull Request - State: closed - Opened by ceesem over 1 year ago

#113 - wip on pyarrow deserialization

Pull Request - State: closed - Opened by fcollman over 1 year ago

#112 - Split resolution metadata

Pull Request - State: open - Opened by ceesem over 1 year ago

#111 - New query bugfix

Pull Request - State: closed - Opened by ceesem over 1 year ago

#110 - Some `live_live_query` calls fail, caused by some pandas v1 vs pandas v2 garbage

Issue - State: closed - Opened by jasper-tms over 1 year ago - 3 comments

#109 - what is the difference and connection between CAVEClient and DVID

Issue - State: closed - Opened by liuyx599 over 1 year ago

#108 - Suggestion/question

Issue - State: open - Opened by cabaker over 1 year ago

#107 - Suggest latest roots

Pull Request - State: closed - Opened by ceesem over 1 year ago

#106 - add new query argument to live live query

Pull Request - State: closed - Opened by fcollman over 1 year ago

#105 - extend format_for to cave_explorer format

Pull Request - State: closed - Opened by ceesem over 1 year ago

#104 - fixing pass through of materialization version

Pull Request - State: closed - Opened by fcollman over 1 year ago - 1 comment

#103 - fix view metadata endpoint

Pull Request - State: closed - Opened by fcollman over 1 year ago

#102 - added view schema endpoints

Pull Request - State: closed - Opened by fcollman over 1 year ago

#101 - Table manager

Pull Request - State: closed - Opened by ceesem over 1 year ago - 2 comments

#100 - adding all tables metadata

Pull Request - State: closed - Opened by fcollman over 1 year ago

#99 - Fall back to annotation table meta

Pull Request - State: closed - Opened by ceesem over 1 year ago

#98 - Jakob edits

Pull Request - State: closed - Opened by jakobtroidl over 1 year ago

#97 - fix: remove duplicated method

Pull Request - State: closed - Opened by dlbrittain over 1 year ago

#96 - Datastack to server map

Pull Request - State: closed - Opened by ceesem over 1 year ago

#95 - Datastack to server map

Pull Request - State: closed - Opened by ceesem over 1 year ago

#94 - Datastack to server map

Pull Request - State: closed - Opened by ceesem over 1 year ago

#93 - remove warning about L2 cache

Pull Request - State: closed - Opened by ceesem over 1 year ago

#92 - improved lineage graph logic

Pull Request - State: open - Opened by sdorkenw almost 2 years ago

#91 - Add oldest timestamp

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#90 - feat: add view query endpoints

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#89 - fix: obey client level set desired resolution

Pull Request - State: closed - Opened by fcollman almost 2 years ago - 1 comment

#88 - Move desired server2

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#87 - Move desired resolution server

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#86 - adding specific annotation id supervoxel lookup

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#85 - split and ingestion

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#84 - adding beta testing version for live live query

Pull Request - State: closed - Opened by fcollman almost 2 years ago

#83 - Metadata updates

Pull Request - State: closed - Opened by fcollman about 2 years ago

#82 - live query uses query table for exact timestamp match

Pull Request - State: closed - Opened by ceesem over 2 years ago

#81 - adding methods to aid in token setup

Pull Request - State: closed - Opened by fcollman over 2 years ago

#80 - annotation_engine create_table() 502 error

Issue - State: open - Opened by lelabbady over 2 years ago

#79 - fixed minor bug in passing merge_reference arg

Pull Request - State: closed - Opened by sdorkenw over 2 years ago

#78 - Get_groups

Pull Request - State: closed - Opened by ceesem over 2 years ago

#77 - Added user operation interface

Pull Request - State: closed - Opened by sdorkenw over 2 years ago

#76 - Add logger name to logging commands

Pull Request - State: closed - Opened by unidesigner over 2 years ago

#75 - Set info cache from dict

Pull Request - State: closed - Opened by ceesem over 2 years ago - 2 comments

#74 - StagedAnnotations

Pull Request - State: closed - Opened by ceesem over 2 years ago

#73 - Livedb query

Pull Request - State: closed - Opened by fcollman almost 3 years ago - 2 comments

#72 - Desired resolution

Pull Request - State: closed - Opened by fcollman almost 3 years ago - 2 comments

#71 - want to implement friendlier annotation posting

Issue - State: closed - Opened by fcollman almost 3 years ago - 1 comment

#70 - Reference merge

Pull Request - State: closed - Opened by fcollman almost 3 years ago - 2 comments

#69 - Create cloud volume

Pull Request - State: closed - Opened by ceesem almost 3 years ago - 3 comments

#68 - Added valid node request to chunkedgraph

Pull Request - State: closed - Opened by sdorkenw almost 3 years ago - 3 comments

#67 - fix: allow expired version timestamps to return as None

Pull Request - State: closed - Opened by dlbrittain almost 3 years ago - 2 comments

#66 - Error fetching materialization meta data

Issue - State: closed - Opened by schlegelp almost 3 years ago - 1 comment

#65 - Dataframe attributes

Pull Request - State: closed - Opened by ceesem almost 3 years ago

#64 - bug fix of root_id_int_list_check unique usage

Pull Request - State: closed - Opened by sdorkenw almost 3 years ago

#63 - Preview split

Pull Request - State: closed - Opened by ceesem almost 3 years ago

#62 - Better datatype checking in chunkedgraph module

Pull Request - State: closed - Opened by sdorkenw almost 3 years ago

#61 - changed return of map filter when no root id was given

Pull Request - State: closed - Opened by sdorkenw about 3 years ago

#60 - Bug fix in query building

Pull Request - State: closed - Opened by sdorkenw about 3 years ago - 1 comment

#59 - support for multiple root lineage request

Pull Request - State: closed - Opened by ogewan about 3 years ago - 1 comment

#58 - adds get_users to auth.py

Pull Request - State: closed - Opened by ogewan about 3 years ago - 1 comment

#57 - Extend reference annotation params

Pull Request - State: closed - Opened by dlbrittain about 3 years ago - 2 comments

GitHub / seung-lab/CAVEclient issues and pull requests