sequana/mapper issues and pull requests

#22 - update metadata

Pull Request - State: closed - Opened by cokelaer 3 months ago - 1 comment

#21 - put back BAM files in final output (not a temp file anymore)

Pull Request - State: closed - Opened by cokelaer 3 months ago - 1 comment

#20 - update pipeline to use new sequana_coverage version

Pull Request - State: closed - Opened by cokelaer 4 months ago - 1 comment

#19 - Fix bwa_split

Pull Request - State: closed - Opened by cokelaer almost 1 year ago

#18 - implement bwa_split to analyse large fastq files

Pull Request - State: closed - Opened by cokelaer about 1 year ago

#17 - check value of aligner when launching the pipeline

Issue - State: closed - Opened by cokelaer about 1 year ago

#16 - Update pipeline to use click. Fix coverage.

Pull Request - State: closed - Opened by cokelaer about 1 year ago

#15 - Set sequana_coverage to False by default (to follow docstring)

Pull Request - State: closed - Opened by khourhin over 1 year ago

#14 - Mapper couldn't handle single end reads mapping

Issue - State: open - Opened by rania-o over 1 year ago

#13 - Update pipeline to filter BAM from unmapped reads

Pull Request - State: closed - Opened by cokelaer over 1 year ago

#12 - plot multiqc sequana/bamtools inverses counts and percentage

Issue - State: open - Opened by cokelaer over 1 year ago
Labels: bug

#11 - Use graphviz apptainer and workflow updates

Pull Request - State: closed - Opened by cokelaer over 1 year ago

#10 - Fixing metadata for pypi upload

Pull Request - State: closed - Opened by cokelaer over 2 years ago - 1 comment

#9 - Fixing metadata for pypi upload

Pull Request - State: closed - Opened by cokelaer over 2 years ago - 1 comment

#8 - add singularity

Pull Request - State: closed - Opened by cokelaer over 2 years ago

#7 - Fix coverage

Pull Request - State: closed - Opened by cokelaer over 2 years ago - 3 comments

#6 - Fix CI

Pull Request - State: closed - Opened by cokelaer almost 3 years ago

#5 - Fixing the failing test

Issue - State: closed - Opened by cokelaer almost 3 years ago
Labels: bug, enhancement

#4 - Adapt bowtie2 rules to follow new wrapper

Pull Request - State: closed - Opened by khourhin almost 3 years ago - 1 comment

#3 - add test for the capture

Pull Request - State: closed - Opened by cokelaer almost 3 years ago - 1 comment

#2 - Adding capture efficiency estimation to sequana_mapper

Pull Request - State: closed - Opened by khourhin about 3 years ago - 1 comment
Labels: enhancement

#1 - improvments

Issue - State: closed - Opened by cokelaer almost 5 years ago

Ecosyste.ms: Issues

GitHub / sequana/mapper issues and pull requests