Ecosyste.ms: Issues

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GitHub / seqeralabs/seqera-kit issues and pull requests

#164 - fix: add correct handling for windows env vars

Pull Request - State: open - Opened by ejseqera about 1 month ago

#163 - Support Windows Powershell environment variables

Issue - State: open - Opened by adamrtalbot about 1 month ago

#162 - return python objects instead of text

Issue - State: open - Opened by sstrong99 about 1 month ago - 3 comments

#161 - seqerakit does not work in user workspaces

Issue - State: open - Opened by ejseqera about 1 month ago

#160 - Release v0.4.9

Pull Request - State: closed - Opened by ejseqera 2 months ago

#159 - docs: add docs for targets flag

Pull Request - State: closed - Opened by ejseqera 2 months ago

#158 - Add targets flag to specify resources for creation in input YAML

Pull Request - State: closed - Opened by ejseqera 2 months ago

#157 - Report success and failures better in seqerakit

Pull Request - State: closed - Opened by ejseqera 2 months ago

#156 - fix: improve logic to respect cli and dryrun flags with info

Pull Request - State: closed - Opened by ejseqera 2 months ago - 1 comment

#155 - fix: remove defaults channel from install and build

Pull Request - State: closed - Opened by ejseqera 3 months ago

#154 - fix: add handling for empty strings in key-value pairs of yaml

Pull Request - State: closed - Opened by ejseqera 3 months ago

#153 - add code commit credentials to examples

Pull Request - State: closed - Opened by schaluva 3 months ago - 1 comment

#152 - [Feature] Report if success or failure better

Issue - State: closed - Opened by adamrtalbot 3 months ago - 1 comment
Labels: enhancement

#151 - [Bug] seqerakit --info does not respect the --cli flag

Issue - State: closed - Opened by adamrtalbot 3 months ago - 1 comment
Labels: bug

#150 - Make seqera-kit installable without using conda 'defaults' channel

Issue - State: closed - Opened by stevekm 3 months ago - 2 comments

#148 - Add a flag to specify targets for resources to create

Issue - State: closed - Opened by ejseqera 5 months ago - 1 comment

#147 - Release v0.4.8

Pull Request - State: closed - Opened by ejseqera 5 months ago

#146 - feat(SeqeraPlatform): seqerakit can write JSON to stdout for detailed records

Pull Request - State: open - Opened by adamrtalbot 5 months ago - 4 comments

#145 - fix: type error when using params dict in yaml

Pull Request - State: closed - Opened by ejseqera 5 months ago

#144 - TypeError: unhashable type 'dict' when globbing over files with params dict

Issue - State: closed - Opened by ejseqera 5 months ago - 1 comment
Labels: bug

#143 - Merge logo change from dev

Pull Request - State: closed - Opened by ejseqera 5 months ago

#142 - fix path to logo

Pull Request - State: closed - Opened by maxulysse 5 months ago

#141 - Adding a logo

Pull Request - State: closed - Opened by maxulysse 5 months ago

#140 - Release v0.4.7

Pull Request - State: closed - Opened by ejseqera 5 months ago

#139 - docs: update README links, version for release in setup

Pull Request - State: closed - Opened by ejseqera 5 months ago

#138 - Update YMLs in CI/CD

Pull Request - State: closed - Opened by ejseqera 5 months ago

#136 - fix: catch errors more reliably

Pull Request - State: closed - Opened by adamrtalbot 5 months ago

#135 - Ignores duplicate label error from platform CLI

Issue - State: closed - Opened by adamrtalbot 5 months ago - 1 comment

#129 - Update e2e GH actions

Issue - State: closed - Opened by ejseqera 7 months ago - 1 comment

#126 - [bug] wrong duplicate detection

Issue - State: open - Opened by alvaromartmart 7 months ago - 2 comments

#121 - feat: add support for stdin to cli

Pull Request - State: closed - Opened by ejseqera 7 months ago

#114 - Adding option to pass in yaml via stdin

Issue - State: closed - Opened by max-l-weaver 8 months ago - 1 comment

#112 - Draft: Add feature to emit YAMLs of existing entities

Pull Request - State: open - Opened by ejseqera 9 months ago

#105 - Create output file when generating resources with CLI

Issue - State: open - Opened by adamrtalbot 10 months ago - 2 comments

#100 - fix: boolean value parsing for keys

Pull Request - State: closed - Opened by ejseqera 10 months ago

#99 - Remove boolean flags entirely if `False`

Issue - State: closed - Opened by ejseqera 10 months ago - 1 comment

#98 - Release v0.4.4

Pull Request - State: closed - Opened by ejseqera 10 months ago

#97 - fix: fix env var parsing in params block with params-file

Pull Request - State: closed - Opened by ejseqera 10 months ago

#96 - Release v0.4.3

Pull Request - State: closed - Opened by ejseqera 11 months ago

#95 - docs: add details on yaml config options, new info arg

Pull Request - State: closed - Opened by ejseqera 11 months ago

#94 - Protect main branch against direct push?

Issue - State: closed - Opened by marcodelapierre 11 months ago - 1 comment

#93 - update python-testing : execute on PR too

Pull Request - State: closed - Opened by marcodelapierre 11 months ago - 1 comment

#92 - Add docs for seqerakit specific yaml options

Issue - State: closed - Opened by ejseqera 11 months ago - 1 comment
Labels: documentation

#91 - Allow direct passing of dictionaries to seqera kit python module

Issue - State: open - Opened by grantn5 11 months ago
Labels: enhancement

#90 - feat: support params and params-file keys

Pull Request - State: closed - Opened by ejseqera 11 months ago
Labels: enhancement

#89 - feat: add info flag and support for tw info

Pull Request - State: closed - Opened by ejseqera 11 months ago
Labels: enhancement

#88 - FIx overwrite

Pull Request - State: closed - Opened by ejseqera 11 months ago

#87 - Unable to overwrite resources, despite setting 'overwrite: true'

Issue - State: closed - Opened by RHReynolds 11 months ago - 3 comments
Labels: bug

#86 - Release v0.4.2

Pull Request - State: closed - Opened by ejseqera 11 months ago

#85 - fix: handling of cli errors and custom exp

Pull Request - State: closed - Opened by ejseqera 11 months ago

#84 - Simplify install

Pull Request - State: closed - Opened by pinin4fjords 11 months ago

#83 - Add support to create yamls of existing entities

Issue - State: open - Opened by ejseqera 11 months ago
Labels: enhancement

#82 - Fix argparse in CLI interface

Pull Request - State: closed - Opened by ejseqera 11 months ago

#81 - Update e2e CI tests

Issue - State: closed - Opened by ejseqera 11 months ago - 1 comment
Labels: enhancement

#80 - Support for bash specific syntax and sys.argv

Pull Request - State: closed - Opened by ejseqera 11 months ago

#79 - fix: multi yaml parsing with same keys

Pull Request - State: closed - Opened by ejseqera 11 months ago

#78 - Fix multiple yaml parsing with the same key

Issue - State: closed - Opened by ejseqera 11 months ago - 1 comment
Labels: bug

#77 - Fix handling of complex environment variables

Pull Request - State: closed - Opened by adamrtalbot 11 months ago - 4 comments

#76 - Release v0.4.1

Pull Request - State: closed - Opened by ejseqera 11 months ago

#75 - docs: update license to apache 2.0

Pull Request - State: closed - Opened by ejseqera 11 months ago

#74 - Error handling for environment variables not set

Pull Request - State: closed - Opened by ejseqera 11 months ago

#73 - Access to seqera-kit repo

Issue - State: closed - Opened by marcodelapierre 11 months ago - 1 comment

#72 - Error if variable in YAML not found in environment

Issue - State: closed - Opened by adamrtalbot 11 months ago - 1 comment

#71 - Broken '--delete' flag

Issue - State: closed - Opened by ejseqera 12 months ago - 1 comment
Labels: bug

#70 - Fix boolean parsing

Pull Request - State: closed - Opened by ejseqera 12 months ago

#69 - Fix boolean parsing in params block

Issue - State: closed - Opened by ejseqera 12 months ago - 1 comment
Labels: bug

#68 - Add yaml templates for all 3 cloud providers

Pull Request - State: closed - Opened by ejseqera 12 months ago - 1 comment

#67 - Update license to Apache 2.0

Issue - State: closed - Opened by pditommaso 12 months ago - 1 comment

#66 - Update package to be compatible with tw v0.9.0

Issue - State: closed - Opened by ejseqera 12 months ago - 1 comment

#65 - Release v0.4.0

Pull Request - State: closed - Opened by ejseqera 12 months ago

#64 - refactor: rename twkit to seqerakit, tower to seqeraplatform

Pull Request - State: closed - Opened by ejseqera 12 months ago

#63 - Release v0.3.1

Pull Request - State: closed - Opened by ejseqera 12 months ago

#62 - Update setup for pypi build

Pull Request - State: closed - Opened by ejseqera 12 months ago

#61 - build: update version in setup

Pull Request - State: closed - Opened by ejseqera 12 months ago

#60 - Release v0.3.0

Pull Request - State: closed - Opened by ejseqera 12 months ago

#59 - Fix CI YAML

Pull Request - State: closed - Opened by ejseqera 12 months ago
Labels: bug

#58 - Fix broken dryrun option

Pull Request - State: closed - Opened by ejseqera 12 months ago

#57 - fix: provide better error msg for resource exists

Pull Request - State: closed - Opened by ejseqera 12 months ago

#56 - refactor: enclose tw cli options in double quotes to twkit

Pull Request - State: closed - Opened by ejseqera 12 months ago
Labels: enhancement

#55 - Update Azure e2e tests

Pull Request - State: closed - Opened by adamrtalbot 12 months ago - 1 comment

#54 - Ignore existing participant error

Pull Request - State: closed - Opened by adamrtalbot 12 months ago - 1 comment

#53 - Fix resource exists error

Issue - State: closed - Opened by ejseqera 12 months ago - 1 comment
Labels: bug

#52 - Relax python dependency

Pull Request - State: closed - Opened by pinin4fjords almost 1 year ago - 1 comment

#51 - Update docs on using custom SSL certificate

Pull Request - State: closed - Opened by ejseqera about 1 year ago - 1 comment

#50 - Recursively delete from yaml

Pull Request - State: closed - Opened by ejseqera about 1 year ago - 1 comment
Labels: enhancement

#49 - Broken --dryrun option

Issue - State: closed - Opened by ejseqera about 1 year ago - 1 comment
Labels: bug

#48 - Support multiple input files

Pull Request - State: closed - Opened by ejseqera about 1 year ago
Labels: enhancement

#47 - Add a --delete option to recursively delete from yaml

Issue - State: closed - Opened by ejseqera about 1 year ago - 1 comment
Labels: enhancement

#46 - Add docs for using custom SSL certificate authority store

Issue - State: closed - Opened by ejseqera about 1 year ago - 2 comments
Labels: enhancement

#45 - If params-file and params to are passed to twkit, pipeline will not launch

Issue - State: closed - Opened by grantn5 about 1 year ago - 4 comments

#44 - Update testing workflow

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#43 - Evaluate environment variables in params block

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 2 comments

#42 - Adds --dryrun

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#41 - Handle any strings with dollar sign as env should be interpreted

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment

#40 - Remove additional bioconda channel from Conda environment.yml

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment

#39 - Incorrect channel definition in environment.yml

Issue - State: closed - Opened by drpatelh about 1 year ago - 1 comment
Labels: bug

#38 - Allow environment variables to be used within params specified as YAML

Issue - State: closed - Opened by drpatelh about 1 year ago
Labels: enhancement